Pseudoalteromonas sp. R3: ELR70_12030
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Entry
ELR70_12030 CDS
T10968
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psrr Pseudoalteromonas sp. R3
Pathway
psrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELR70_12030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psrr03019
]
ELR70_12030
03009 Ribosome biogenesis [BR:
psrr03009
]
ELR70_12030
Enzymes [BR:
psrr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ELR70_12030
Messenger RNA biogenesis [BR:
psrr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ELR70_12030
Ribosome biogenesis [BR:
psrr03009
]
Prokaryotic type
rRNA processing factors
ELR70_12030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AZZ97781
UniProt:
A0A3Q9W348
LinkDB
All DBs
Position
1:complement(1647937..1651257)
Genome browser
AA seq
1106 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAKTYFPSGYTFNGRPNIKDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERIELKEALSRLNLPKGMGLIVRTAGVGKSFEEL
EYDLKALLVHWEAIQNAADSGKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKARVFEEA
KAHIERFRPDFINRVKLYQNDVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAVRADRARVQIGKISRFGLLEMSRQRLRPSLGEASQHTCPRCDGQGTIRSNESIAL
SILRLIEEEAIKENTAQVNAQVPVKVGSYLLNEKRRAVQRIEKRHNCDVVIIPNQHMETP
HYDVVRLRKDDVPESVSYDQVVTPEVEVVATPIAAPVAKEEPVLKGVAMPTAPAPAPQPA
EAAKQPQVQKQVEEEAGLLSRIGKWLKGLFGSEEEQKEEQPKQQPRQRQDNRRRNQQRRK
NRNRNDRRNDERNDNRKAEQDNSDAKTRKDEQNDNQERSEGRNKRRRQNQRRRNDSDKAK
QSHEQNTEQKQDNAEQASQEKSVKPRRQRRNLKKKVRVEGEQVNTQTTDAQPVVADNSVQ
KPEQALDQGTTNAAEDAAAQEMEAKVQADKKIAEEVIEQTQHNEKVEESSEEDKEQREQP
RTRSRRSPRHLRAAGQKRKRNEAKDATPAFVPVADQAAAEFEAEMSATAKAQVAVSEEIQ
QAPATEASAEVQAEQAPVTEAPAEVQAEQAPVTEAPAEVQAEQAPVTEAPAEVQAEQAPA
TETPAEVQAEQAPATEAPAEVQAEQAPATEAPAEVQAEQAPATEAPAEVQAEQAPATEAP
AEVQAEQAPATEVPAEVQAEQAPATEAPAEVQAEQAPATEAPAEVEAEQAPATEAPAEVQ
AEQAPATEVQAKQATAQTKAVRSRYQYVAEAPMTKATADDSADISISVTAMPDSMREKVS
DSGQGSGSKSPTARASSAMASPASYE
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctgatcaatgcgacgcagcaagaagaaatgcgcgttgcactggttgac
ggccagcgactgtacgatttagacatcgagagccctggtcatgaacagaaaaaagccaat
atttataaaggtaaaatcacccgtatagaaccttccctagaagccgcttttgttgattat
ggtgctgagcgccatggtttccttcctctcaaagaaattgccaaaacttactttccttca
ggctacacgttcaacggtcgcccaaacatcaaagatgtgatcaaagaaggtcaggaagtc
attgttcaggttgataaagaggaacgaggccaaaaaggcgcagcactgaccacctttatc
agtgtcgccggcagctacctggtactgatgccaaataaccctcgtgcaggcggtatttct
cgccgtatcgaaggcgatgagcgtatcgaactgaaagaagcgttgagccgcctaaatctg
ccaaaaggcatgggcctgattgtgcgtacagcaggcgtaggtaaatcttttgaagaactc
gaatatgacctgaaagcgttgctagtacactgggaagcaatccagaatgccgcagacagt
ggtaaggcaccgttcttaatccatcaggaaagtaacgttatcttccgcgccatccgtgat
tatttgcgccgcgatatcggtgagatcctgatagataaagcgcgcgtatttgaagaagcg
aaagctcacattgagcgcttccgccctgacttcatcaatcgtgttaaactctatcaaaat
gatgttccgctgttcacgcactatcaaatagagagccagattgaatcagctttccaacgt
gaagtacgtttgccttctggcggttcgattgtcattgacccaaccgaagcgcttacttct
attgatatcaactcctcaaaggcaaccaaaggtggcgatattgaggaaacagcgttaaac
actaacctggaagccgcagacgaaattgcccgtcaattgcgtttacgtgacctaggtggt
ctgattgttatcgacttcatagatatgacgcctccgcgtcatcaacgcgaagtagagaac
cgcctgaaagatgcggtacgcgcagaccgcgctcgtgtgcagattggcaaaatttcgcga
ttcggtttgctcgaaatgtcacgccagcgcttgcgcccttcattgggtgaagcgagtcaa
cacacatgtccacgttgtgatgggcaagggactattcgctcgaacgaatcgattgcgctc
tctattcttcgcctgattgaagaagaagcgataaaagagaatacagcacaggtcaatgca
caagtgccagttaaagtaggctcttatctgttgaatgaaaagcgccgagctgtacaacgc
attgaaaaacgccacaactgtgacgttgtgatcatccctaaccaacacatggaaacgccg
cattatgacgtggtacgcctgcgtaaggatgatgtgcctgagagtgttagctacgatcag
gttgtaacgccagaagttgaagttgtcgcaacaccaattgccgcgcctgtggccaaagaa
gaaccggttctaaaaggcgttgccatgcccactgcgccggcacctgccccacaaccagcc
gaagcagctaaacaacctcaagtacaaaagcaagttgaggaagaagctggcttgttgagt
cgtatcggtaaatggctcaaaggcttgtttggctctgaagaagagcaaaaagaagagcag
cctaagcaacaacctcgtcagcgtcaggataatcgccgtcgtaatcaacagcgccgtaag
aatcgcaaccgtaatgaccgccgtaacgacgaacgcaatgataatcgtaaggctgaacaa
gacaacagcgatgctaaaacacgcaaagatgagcagaacgataatcaggagcgtagcgaa
ggccgtaataagcgtcgccgccagaaccagcgtcgtcgtaatgactcggataaagcaaag
caaagccatgagcaaaataccgagcaaaaacaggacaacgcagaacaggcaagccaggaa
aaatcggttaagccacgtcgccaacgtcgtaacttgaaaaagaaagtgcgtgtagagggt
gagcaagtcaacactcagaccactgatgcacaacctgtagtcgctgataactctgtgcag
aagcctgagcaagctttggatcaaggtacaacaaatgccgctgaagatgctgcagctcaa
gagatggaagctaaggtacaagctgacaaaaaaattgcggaagaagtaattgagcaaact
caacacaacgaaaaagttgaggagtcaagcgaagaagataaagagcaacgtgaacaacct
cgcactcgctctcgtcgctctccgcgccacctgagagctgccggtcaaaagcgcaagcgc
aatgaagctaaggatgcaacacctgcatttgtacctgttgcggatcaagccgccgctgag
ttcgaagccgagatgagcgctacagcaaaggcacaagttgcagtttctgaggaaattcaa
caagcccctgctactgaagcatcggctgaagtgcaggctgaacaagctcctgtaactgaa
gctccggctgaagtgcaggctgaacaagctcctgtaactgaagctccggctgaagtgcag
gctgaacaagctcctgtaactgaagctccggctgaagtgcaggctgaacaagctcctgct
actgaaacaccggctgaagttcaggctgaacaagctcctgctactgaagcaccggctgaa
gtacaggctgaacaagctcctgctactgaagcaccggctgaagtacaggctgaacaagct
cctgctactgaagcaccggctgaagtacaggctgaacaagctcctgctactgaagcaccg
gctgaagtacaggctgaacaagctcctgctactgaagtaccggctgaagtacaggctgaa
caagctcctgctactgaagcaccggctgaagtacaggctgaacaagctcctgcaactgaa
gcaccggctgaagtagaggctgaacaagcccctgcgactgaagcaccggctgaagtacag
gctgaacaagcccctgctactgaagtgcaagctaaacaagctacagcgcagacaaaagct
gtccgctctcgttatcaatacgtcgccgaagcaccaatgacaaaagcgacggctgatgat
agtgccgatatcagcatttcagtaacggctatgcctgactctatgcgcgaaaaggtaagt
gacagcggccagggctccggttccaagtctcctacagcgcgtgcaagttcagcaatggcg
tcgccagctagctatgaataa
DBGET
integrated database retrieval system
