Pseudoalteromonas sp. R3: ELR70_16660
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Entry
ELR70_16660 CDS
T10968
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psrr Pseudoalteromonas sp. R3
Brite
KEGG Orthology (KO) [BR:
psrr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psrr03019
]
ELR70_16660 (hrpA)
Enzymes [BR:
psrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ELR70_16660 (hrpA)
Messenger RNA biogenesis [BR:
psrr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ELR70_16660 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
WHD_HA2
NACHT
T2SSE
SLFN-g3_helicase
ResIII
RasGAP_C
Cas3-like_C_2
AAA_30
AAA_25
ABC_tran
DUF3300
Motif
Other DBs
NCBI-ProteinID:
AZZ98598
LinkDB
All DBs
Position
1:complement(2679455..2683339)
Genome browser
AA seq
1294 aa
AA seq
DB search
MDLQSLYSNIADCLKKDQFLFKKRLQGVKKIKDEAKQQKVLTQITRDIEHSKTLRVKRLA
ELPAVQYPESLPVSQKKDDIKKAIAENQVVIVAGETGSGKTTQLPKICLELGRGVDGYIG
HTQPRRLAARSVSNRIAEELNCELGQEVGFKIRFSDQVSDKSYIKLMTDGILLAEIQQDR
YLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKVIITSATIDPERFSKHFNNAPI
IEVSGRTYPVEVRYRPVIDASGDESEAENDQLQGIFDAVDELCAEGPGDILIFMNGEREI
RDTADALSKRNLKGVEILPLYARLSNAEQNRIFAAHSHRRIVLSTNVAETSLTVPGIRYV
IDPGTARISRYSYRTKVQRLPIEAVSQASANQRMGRCGRVAAGVCIRLYSEEDFLGRPEF
TDPEILRTNLASVILQMLALGLGDIKRFPFVQAPDNRNITDGVTLLEELGAVKPAARREQ
TTLTQTGRKLSRLPIDPRLARMVLAAAPLGALREVIIIAAVLSIQDPRERPQEKRGAADE
KHGRFEDPDSDFMAFLNLWQYLEEQQEALSRSQFRKQCQKDFLAYMRVREWQDIVYQLTT
VCTEMGLKASGNDASFEAIHQALLSGMLSHIGQKDEKKFYKGARNSQFHIFPGSGLFKKS
PKWVMAAELVETSKLYARINARIDVNWVAPLAEHLVKRSYSEPHWEKKQGCVIAFEQQTL
YGLIIVGKKRTVYSQIEPALCRELFIKEALVAQQLGQNEAFLKHNQALIEDIQDLENKAR
RRDILVDEHMMQAFYEQRIPADVNNRAAFNHWWKEKKKTDKRFLHMDRDALMQHEASHIT
ALDYPDVWQQGNLMLPLSYHFEPGQPVDGVMVNIPLPLLNQVANEGFDWHIPALRHELIC
SLIKSLPKSLRRNFVPAPNYADAVLAAIEPMQGGFLEALANRLLRMTGVKVDAEAFDLGA
LESHLKMQFQVLDEHNKVIAHGYDLDALKAKLQGKVTQTLSKVAEEGIEQDGLTQWSFGD
LPEEYTKKQGGYEIKAFPALVDNKQSTSISLFDHPLKAQQAHRLGLRRLVMLNVPSPVKY
LQQHLPNKAKLGLYFNPFGKINDLIDDCTAAGIDALLGDYTAIRSEQDFEKAKEYVRAEL
GDKVVDIASAVEQVLSIAHGINKRMKGRVDLTMITAHGDIKSQLESLIFKGFVSQHGAHK
LSDLLRYMKAIEKRLEKLPVDPNRDRLCVLELEKVATAYTDKCNKQPKGLPMPEALDEVF
WMQQELRVSLFAQTLGTPYPISAKRITNALNEIE
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
gtggatttgcagtcgttgtattcgaacatagcggattgcctcaaaaaggatcagtttctc
tttaaaaaacgtcttcagggcgtcaaaaaaataaaagacgaagcgaaacaacaaaaggta
cttactcagataacgcgtgacatagagcacagtaaaacgcttagagtgaagcgcctggct
gaactgccggcggtgcaatatcctgagtcgctgccggttagccagaaaaaagacgacatt
aaaaaagccattgccgagaaccaggtggtaatagtcgcgggtgaaaccggctccggtaaa
accactcagctacctaagatctgcctggaactgggccgtggtgttgatggctatattggt
cacactcagccacgacgtctggccgcacgcagcgtgtcaaaccggattgccgaagagctt
aattgtgagcttggtcaggaggttggctttaagatccgttttagcgatcaggtgtctgat
aagagctatatcaaattaatgaccgacggtatcttgctggcagagatccagcaagacaga
tacctgaaccagtacgataccatcatcatagatgaagcccacgagcgtagtctgaatatc
gactttatccttggctatcttaaaaatttgttacctaagcgcccagatctcaaagtgatc
atcacctcagcgacaatcgatccggaacgtttttccaagcactttaataacgcgcccatc
attgaggtatcgggccgcacctatccggtagaagtgcgctatcgcccagtgattgatgcc
agtggggatgagagtgaagccgaaaacgaccagctacaggggatcttcgatgccgtagac
gagctgtgtgcagaaggccccggagacatcctgatctttatgaatggcgagcgggaaatt
cgcgatacggcggatgcgctgagtaagcgtaacctcaaaggggttgagatcctgcctttg
tatgcccgtttgtcgaatgccgagcaaaatcgcatttttgccgcacacagccaccgtcgt
attgtattgtcaaccaacgtggccgaaacctcactgacggtacctgggatccgctatgta
attgacccgggcacggcgcggatcagccgctacagttatcgcactaaggtgcagcgattg
cctattgaagctgtctctcaggctagtgctaaccagcgtatgggacgctgtggccgggtc
gctgcgggtgtctgtatccgcttgtattcggaggaagatttcctgggtcgtccggaattt
accgatccggaaattctgcgtaccaacctggcatcggttattttgcaaatgctggcgctg
ggcctgggtgatatcaagcgttttccatttgtacaagctcccgataatcgcaatatcaca
gatggtgtcaccttgcttgaagagcttggcgcggttaaacctgccgccaggcgcgagcaa
acgacactaacccagaccggtcgtaagctcagccgcttacccatagatccgcgcctggct
cgtatggtactggccgcagcgcctttgggggcattgcgtgaggtgatcattatcgctgcg
gtactgtcgattcaggatcccagagaaagaccgcaggaaaagcgtggcgcagccgacgaa
aagcatggtcgatttgaagatccggactcggattttatggcgtttttaaacctctggcag
tatctggaagagcagcaggaagcgctcagtcgcagtcagttcagaaagcaatgtcagaaa
gactttttagcctatatgcgggtcagagagtggcaggatattgtttatcagctcaccaca
gtgtgcaccgaaatgggcctcaaagcctcaggtaacgacgccagcttcgaagccattcac
caggcgctgctcagcggcatgctgagccacataggtcaaaaagacgagaaaaaattctac
aaaggggcgcgcaacagccagttccatattttcccgggctctggcctgtttaagaaaagt
cccaagtgggtgatggcggccgaactggtagaaaccagtaagctctatgcccgcattaat
gccagaattgatgttaactgggttgccccgctggcggagcatctggttaagcgcagctac
agtgaaccgcattgggaaaagaagcagggctgtgtcatcgcctttgaacagcaaaccctg
tatggcctcatcatagttggcaaaaagcgtacggtttacagccagattgaaccggcgctg
tgtcgtgaactgtttattaaagaagcgctggttgcccagcaactgggtcaaaatgaggcc
tttttaaagcataatcaggccctgattgaagatattcaggatctggaaaacaaagcgcgt
cgccgggatattctggtcgatgagcatatgatgcaggcgttttacgagcagcggatcccg
gccgatgtcaataatcgggctgcgttcaaccactggtggaaagagaagaaaaaaactgac
aaacgctttttgcatatggacagagacgctctgatgcagcacgaagcgtcacacattacg
gcgctggattatccagacgtgtggcagcagggcaatctgatgttgccattgagctatcat
tttgagcccggtcagcccgttgacggcgtgatggtgaacatccccttaccactgcttaac
caggtggctaatgaggggtttgactggcatattccggcactgcgccatgaattgatctgc
tctttgatcaagagcctgccaaaaagtctgcgacgcaactttgtcccggcgcccaactat
gccgatgcggtactcgctgccatagagccgatgcagggcggttttcttgaagccctggcc
aatcgcttattacgtatgacgggcgttaaagttgatgctgaggcgttcgatctcggggca
ctggaatcgcacttaaaaatgcagtttcaggtactggatgaacacaataaggtgattgcg
catggctatgacctggatgcactcaaagccaaattacaaggcaaggtcactcaaacgcta
tcaaaggtggccgaagagggcatagagcaggacgggctgacgcagtggtcgtttggtgac
ctgcctgaggaatacaccaaaaaacagggcggttatgagatcaaggcgtttccggcgctg
gtagacaacaagcaaagcacctcaatcagtttatttgatcatccgctcaaggcacaacag
gcccaccgcctcggtttacgtcgactggtgatgctgaacgtgccctcaccggtgaaatat
ttacagcagcatttgccgaataaagccaagctggggctgtattttaatccgtttggtaaa
attaacgacctgatcgacgattgtaccgcagcggggatcgatgccttactgggagattac
accgcgatccgctctgagcaggattttgaaaaagccaaagaatatgtccgggctgaactg
ggagacaaagtggtagatattgcgtcggcggttgagcaggtgctaagtattgcgcatggc
attaacaagcgcatgaaagggcgggttgatttaaccatgatcaccgcgcacggagatatc
aagtctcagttagagagtctgatctttaaaggctttgttagccagcatggtgcacacaag
ttgtctgatctattgcgttatatgaaagcgattgaaaaacgtcttgagaagttgccggtc
gatccaaatcgtgaccgtttgtgtgtgctggaactcgaaaaagtagcaactgcatacaca
gataagtgtaataagcagccaaaagggctgccaatgccagaggccctcgatgaagttttt
tggatgcagcaggaacttcgggtgtctttatttgctcaaacactaggcacaccttatccg
atttcagcaaagcggatcactaatgcgctaaatgagatcgaatag
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integrated database retrieval system
