Pseudoalteromonas sp. R3: ELR70_20680
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Entry
ELR70_20680 CDS
T10968
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psrr Pseudoalteromonas sp. R3
Pathway
psrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELR70_20680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psrr03019
]
ELR70_20680
Enzymes [BR:
psrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ELR70_20680
Messenger RNA biogenesis [BR:
psrr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ELR70_20680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZZ99279
LinkDB
All DBs
Position
1:3538891..3540273
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AA seq
460 aa
AA seq
DB search
MSFSSLGLSPEINQAVADQGYSTPTPIQEQAIPAILKGRDIMAAAQTGTGKTAGFTLPML
ELLSSKPKVKANQVRALILTPTRELADQVWQSVELYSKHLTLSCQVVYGGVKINPQMMKL
RKGADVLVATPGRLLDLYQQNAVKFDQLDIFVLDEADRMLDMGFIHDIKRLIKLLPPKRQ
NLLFSATFSDEIRSLAKGLIQDPVEISVAPANSTAKSVTQWAYPVDKSRRTALLKHLINT
HDWQQVLVFTRTKHGANRLVRDLEKSKINAAAIHGNKSQSARMKALAGFKSGELRVLVAT
DIVARGLDIQELPHVVNFDLPNVYEDYVHRIGRTGRAGATGEAVSFVSEDVASDLFGIER
LIQQLIPRVVEPGFEPQNPVPESKLDTRPIKPKKPKKPKKPKTATAEQSAQRKPADKPKN
GQEPQSGNDKTAAPKRRRRRPANSQGKPGGNKPAAQKKPN
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcagcagtcttggcttatctcccgaaattaatcaagccgtagccgatcagggt
tactcaacgccaacccctattcaggagcaagccattcccgccatcttaaaaggccgggac
attatggccgcagcccagacaggcacaggcaaaacagcaggctttaccctgcccatgctg
gagctattgagcagcaaaccaaaagtgaaagccaatcaggtcagggctctgatcctgaca
ccgacccgtgaactggcggatcaagtctggcaaagtgttgaactgtatagtaaacacctt
actttgtcctgccaggttgtctacggtggcgtgaaaatcaacccacaaatgatgaagctg
cgcaaaggagctgatgtactggttgcgacaccgggccggttgctcgacttgtaccaacaa
aatgcggtgaagttcgatcagttagacatttttgtgctcgacgaagcagacagaatgctg
gatatggggtttatccacgacattaaacgcctcattaagttgctgccaccaaagcgtcag
aacttattattttcagccactttttctgatgagatccgctcactcgccaaggggcttatt
caggatcctgttgagatttccgtggcaccagccaacagcaccgccaaaagcgtcactcaa
tgggcttacccggtagataaaagccgacgtaccgccttactcaagcacctgataaacacg
catgactggcaacaggtactggtctttacccgcaccaaacatggtgctaatcgcctggta
cgtgacctcgaaaagagtaaaattaatgccgcagcgatccacggcaataagagtcagagt
gcgcgaatgaaggcgcttgcaggctttaagagtggtgagttacgcgtattagtggccacc
gacattgtggcgcgaggcctggatattcaggaattaccacacgtcgtcaactttgacttg
cccaatgtgtacgaagactacgtgcaccgtattggtcgcacgggtcgagccggtgccacc
ggtgaggcagtctcgtttgtcagtgaagatgttgccagcgatctgttcggcattgagcgc
ttaatccagcagttgatcccgcgcgttgtagagcctgggttcgagcctcaaaacccggtt
cctgagtcaaaactggacactcggccaattaagccaaagaaaccgaaaaaacctaagaaa
ccaaaaacagccacagcggagcaatccgctcagcgcaagccggcggacaagcccaaaaac
ggccaagagccgcaatccgggaatgataaaaccgctgcgccaaaacgccgcagaagacgt
cctgccaatagtcagggcaaacccggcggtaataaacctgcggcacagaaaaagccaaac
taa
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