KEGG   Pseudomonas sp. RU47: CCX46_04705
Entry
CCX46_04705       CDS       T11150                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psru  Pseudomonas sp. RU47
Pathway
psru02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psru00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CCX46_04705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psru03021]
    CCX46_04705
Transcription machinery [BR:psru03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CCX46_04705
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_20 HTH_24 GerE HTH_28 HTH_5 HTH_10 HTH_7 Trp_repressor HTH_11 HTH_36 HTH_38 HTH_40 TnsD HTH_IclR HTH_29 HTH_DeoR PhyR_sigma-like Rv2175c_wHTH MarR_2 DUF722 DUF1492
Other DBs
NCBI-ProteinID: AZZ74462
LinkDB
Position
complement(1087309..1087797)
AA seq 162 aa
MSSAHPVESLYQAHHSWLTGWLRRKLGCPDNAADLAQDTFIKVLTAREPPVIIEPRAFLT
TLAKRVLFNHYRRQDMERAYLDTLAQIPEMVAPSEEDKAIILQTLMELDELLDGLPRQVK
RAFLLAQVDGLTYPQIAAELGISVATVKRHLNKAAMRCYFAL
NT seq 489 nt   +upstreamnt  +downstreamnt
ttgtcgtccgcccatcccgtcgaatcgctctatcaggcccaccacagctggctgaccggc
tggctgcggcgcaagctcggctgcccggacaacgcggcggatctggcgcaggacacgttc
atcaaagtgctcaccgcccgcgaaccaccggtaatcatcgagccgcgtgccttcctcacc
accctcgccaagcgcgttctgttcaatcactaccgccgtcaggatatggagcgcgcctat
ctcgacaccctcgcgcagataccggaaatggtcgcgccgtcagaagaagacaaagcgatc
atcctgcaaaccctgatggagctggacgagttgctcgacggtttgccgcgtcaggtcaaa
cgcgcctttttgctggcgcaggtcgatggcctgacttatccacagattgccgccgaactg
ggcatttccgtggccacggttaaacggcatttgaacaaagcagcgatgcgctgctatttc
gccctatga

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