Pseudomonas sp. RU47: CCX46_06120
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Entry
CCX46_06120 CDS
T11150
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
psru Pseudomonas sp. RU47
Brite
KEGG Orthology (KO) [BR:
psru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psru03009
]
CCX46_06120
Enzymes [BR:
psru01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
CCX46_06120
Ribosome biogenesis [BR:
psru03009
]
Prokaryotic type
ribosomal protein modification factors
CCX46_06120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Matrix_Paramyxo_N
Motif
Other DBs
NCBI-ProteinID:
AZZ74733
LinkDB
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Position
complement(1378893..1380230)
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AA seq
445 aa
AA seq
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MSTTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVLAVTGPQQYEQVVNAVHEVVP
PRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKNWREICPD
LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVDGAPANDLDLEIVPDDVK
QDRWDRFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAVGRCFFDAPEIDGNVFIDNGS
NLKPGDKVWCKVTDADEYDLWAEQI
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccactcccgcgccggccaatccaaaggttggctttgtatctctgggttgcccg
aaagcactggtcgactccgagcgcatcctgacccagctgcgcatggaaggctatgacgtg
gtgtccacctatcaggacgccgacgtggtagtcgtcaacacctgcggtttcatcgattcg
gccaaggctgagtcgctggaagtgatcggcgaagcgatcaaggaaaacggcaaggtcatc
gtcaccggttgcatgggcgtggaagaaggcaacatccgcaacgtgcacccgagcgtgctg
gccgtgaccggtccgcagcaatacgaacaagtggtcaacgccgtgcacgaagtcgtaccg
ccgcgtcaggatcacaacccgttgatcgacctggtgccgccgcaaggcatcaagctgacc
ccgcgccactacgcgtacctgaagatttccgaaggctgcaaccacagctgcagcttctgc
atcatcccgtcgatgcgcggcaaactggtcagccgtccggtgggtgatgtgctcgacgaa
gctcagcgtctggtcaaatccggcgtcaaagagctgttggtgatctcgcaagacaccagc
gcctacggcgttgacgtgaaataccgcaccggtttctggaacggcgcgccggtgaaaacc
cgcatgaccgaactctgcgaagccctgagcaccctcggcgtctgggtgcgtctgcactac
gtttacccgtacccgcacgttgacgagctgatcccgctgatggccgccggcaagatcctg
ccgtacctggacatcccgttccagcacgccagcccgaaagtattgaagtcgatgaaacgc
ccggccttcgaagacaagaccctggcgcgcatcaagaactggcgcgaaatctgcccggac
ctgatcatccgttcgaccttcatcgtcggcttcccgggcgaaaccgaagaagacttccag
tacctgctgaactggctgaccgaagcccagctcgaccgcgtcggttgcttccagtactcg
ccggtggatggcgctccggcgaatgatctggatctggagatcgtaccggacgacgtcaag
caggatcgttgggatcgcttcatggcgcaccagcaagcgatcagctcggcacgcctgcaa
atgcgtatcggccgtgaaatcgaagtgctggtggacgaagtcgacgagcaaggcgcggtc
ggccgctgcttcttcgatgccccggaaatcgatggcaacgtgtttattgataacggcagc
aatctgaagccgggtgacaaggtctggtgcaaggttactgacgctgacgagtatgacctg
tgggctgagcagatctga
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