Pseudomonas sp. RU47: CCX46_09950
Help
Entry
CCX46_09950 CDS
T11150
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
psru Pseudomonas sp. RU47
Pathway
psru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCX46_09950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psru03400
]
CCX46_09950
DNA repair and recombination proteins [BR:
psru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCX46_09950
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CCX46_09950
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZZ75462
LinkDB
All DBs
Position
2237821..2239836
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFEPAGDQPEAIRQLVEGIEAGLAHQTLLGVTGSGKTFSIANVISQIQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKMPRF
TFYPKSHYVTPRETLLDAIEHIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHAGRVVEQVVRPTGLVDPQ
VEVRPALTQVDDLLSEISKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADRMTGSMERAIGETERRRDKQIAFNLENGITPRGVIKDVADIMEGATV
PGSRSKKRKGMAKAAEENAKYEAELRSPSEITKRIRALEEKMYQLARDLEFEAAAQMRDE
IAKLRERLLAV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaattccagctcgtcacccgcttcgagcccgccggcgaccagccggaagccatc
cgccaattggtggagggcatcgaggccgggctggcgcaccagacgctgctcggtgtgacc
ggctcgggcaagaccttcagcatcgccaatgtcatctcgcagatacagcgcccgacgctg
gtattggcgccgaacaagaccttggccgcgcagttgtacggcgagttcaaggcgttcttc
ccgaacaacgccgtcgagtatttcgtctcctactacgactactatcagcctgaagcctat
gtgccgtcgtccgacaccttcatcgagaaggatgcgtcgatcaacgaccacatcgagcag
atgcgtctgtcagcaaccaaagcgctgctcgagcgcaaggacgcgatcatcgtcaccacg
gtgtcgtgcatctacggtctcggtagcccggaaacctatctgaagatggtgctgcacgtc
gatcgcggcgacaaactcgaccagcgcgcattgctgcggcgtctggccgacttgcagtac
acccgcaatgacatggattttgcccgcgcgaccttccgtgtgcgcggcgatgtcatcgac
atttacccggcggaatccgatctggaagcgattcgcatcgagctgttcgatgacgaggtc
gaaagcatttccgcattcgacccgctgaccggcgaagtcatccgcaagatgccgcgcttc
accttttacccgaagagccactatgtgacgccacgggaaaccctgctcgacgccatcgaa
cacatcaaggtcgaactgcaggaacgcctcgaatacctgcgcagcaacaacaaactggtg
gaagcccagcgccttgaacagcgcacccgtttcgacctggaaatgatcctcgaactgggt
tactgcaacggtatcgaaaactactcgcgctacctgtccgggcgtccggccggtgccgcg
ccgccaacgctctacgattatctgccggccgacgctttgctggtgatcgacgaatcccac
gtcagcgtgccgcaggtcggcgcgatgtataagggcgaccgttcgcgtaaggaaacactg
gttgaatacggtttccgtttgccgtcggcgctggacaatcggccaatgcgttttgacgag
tgggaaggggtcagcccgcagaccatttttgtctctgcgacaccaggcaactacgaagcc
gagcacgccgggcgcgtggtcgagcaagtggtgcggccgaccggtctggtcgacccgcag
gtagaagtgcggccggcgctgactcaggtcgacgacctgctctcggaaatcagcaaacgt
gtggcggtcgaggaacgggtgctggtcaccacgctgaccaagcgcatggccgaagacctt
accgattacctcgccgaccacggtgtgcgcgtacgttatttgcactcggacatagacacc
gtcgagcgcgtggaaatcatccgtgatctgcgcctcggcacctttgacgtgctggtgggt
atcaacctgctgcgtgaaggcctggacatgccggaagtgtcgctggtggcgattcttgat
gcggacaaggaaggcttcctgcgttccgagcgctcgctgatccagaccatcggccgggcg
gcgcgtaacctcaatggtcgggcgattctctacgctgaccgcatgaccggttcgatggag
cgagcgattggcgagaccgagcgtcgtcgcgacaagcagatcgccttcaacctggaaaac
ggcatcaccccacgcggggtgatcaaggacgttgccgacatcatggaaggcgccaccgtg
ccaggctcgcgcagcaagaagcgcaaaggcatggccaaagcggccgaagagaacgccaaa
tacgaagccgaactgcgctcgccgagcgagatcaccaaacgcattcgtgcgctggaagag
aagatgtatcagctggcgcgggatctggagtttgaagcggcggcgcagatgcgcgatgag
attgccaagctgcgcgagcggctattggctgtttga
DBGET
integrated database retrieval system
