Pseudomonas sp. RU47: CCX46_20280
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Entry
CCX46_20280 CDS
T11150
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psru Pseudomonas sp. RU47
Brite
KEGG Orthology (KO) [BR:
psru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psru03032
]
CCX46_20280 (topA)
03400 DNA repair and recombination proteins [BR:
psru03400
]
CCX46_20280 (topA)
Enzymes [BR:
psru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CCX46_20280 (topA)
DNA replication proteins [BR:
psru03032
]
Prokaryotic type
DNA Topoisomerases
CCX46_20280 (topA)
DNA repair and recombination proteins [BR:
psru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CCX46_20280 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AZZ77390
LinkDB
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Position
complement(4557028..4559658)
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLSPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSEPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGST
VRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIEDEFGKKYLPETPN
VYSSKEGAQEAHEAIRPSDANTTPSKLAGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVMKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKSVLDEFYGDFKKKLEVAENPESGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPECKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIVPHKDEIDPKYHFLCDAPKKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYFDGGKWTVEDKRTKAKAE
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagagccagccgccaagcgcggcaaggctgctgcgggcgaa
ggtccggtgctctcgccgaaagagaaagcgcgtaagcagctggtctcgcgtatgggtgtc
gatcccgatcatggctggaaagccaagtacgagatcctcccgggtaaagagaaggtcatc
gaagagctgcgccggctcgccaaagatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgattcaggaagccttctcggag
ccgggcgagctggacatcgatcgtgtcaacgcacagcaggcgcgtcgtttccttgaccgc
gttgtgggttacatggtctcgccgctgctgtgggcgaagatcgctcgtggtctgtctgcc
ggtcgtgtgcaatcggtagccgtgaagctggtggttgagcgtgagcgcgaaattcgtgcg
ttcaacccggaagagtactgggaagtgcatgccgacctcggcaccgccaaaggctcgacc
gtgcgtttcgaagtagctcgcgagaaaggcgaagccttcaagccgctcaacgaagcccag
gccatggctgcgctggagaagctcaagtcttccagctacagcatcgtcaaacgcgaagac
aaaccgaccagcagcaagccttcggcgcctttcatcacgtcgaccctgcaacaggctgcg
agtaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctatatgcgtaccgactcgaccaacctctcggccgatgccgtggcg
atggcgcgtacttacatcgaagacgagttcggcaagaagtacctgccggaaacaccaaac
gtctacagcagcaaagaaggcgctcaagaggctcacgaagcgatccgtccttccgacgcc
aacaccacgccgagcaagctcgcaggcatggagcgtgacgctgagcgtctctacgagttg
atctggcgtcagttcctcgcttgccagatgctgccggcgcaatacctgtcgaccactgtc
agcgtcggcgctggcgacttcgagctgcgcgccaagggccgtatcctcaagttcgacggt
tacacccgcgttatgccgcaaattgccaagccaggcgacgacgacgttctgcctgatatg
gcgcagggcgacgtgatgaagctgatcaagcttgatccatcgcagcacttcaccaagccg
ccggcgcgttactcggaagccagcctggttaaagaaatggaaaaacgtggcatcggtcgt
ccttcgacttacgctgcgatcatttcgaccattcaggatcgcggctacgtgactctgcac
aaccgtcgtttctactcggaaaagatgggcgacatcgttaccgagcgtctgtcggaaagc
ttctccaacctcatggactacggcttcactgccggcatggaagagaacctcgatgacgtg
gcacagggtgagcgcgactggaaaagtgtgctggacgagttctacggcgatttcaaaaag
aaactcgaagtagccgaaaaccctgaaagcggcatgcgcgccaatcagccggtcatgacc
gacattccgtgcacgacctgtgggcgtccgatgcagattcggactgcgtcgaccggcgtg
ttcctcggttgctcaggctacagcctgccgccgaaagaacgctgcaaagccaccgtcaac
ctggtgccgggcgacgagatcgctgcggacgatgagggtgagtcggagtctctggttttg
cgcggcaagcatcgttgcccgatctgcagcacggcgatggacgcttatctgctcgacgag
aagcgcaagctgcacatctgcggtaacaacccggattgtgctggctacgaaatcgaagag
ggcagctatcgcatcaagggctacgaaggtccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagactggccgtttcggcaagttcttcggttgcaccaaccctgagtgc
aagaacacccgcaaactgctgaaaagcggtgatgcagcgccgccgaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacatcctccgtgacggtgcc
tctggtctgttcctggccgccagccagttcccgaaaaaccgtgaaacccgcgctccgctg
gtgatcgagattgtgccgcacaaggacgaaatcgatccgaagtaccacttcctctgcgac
gcgccgaagaaggatcctgatggtctgcctgcggtcatccgctacagccgcaagaccaag
gagcaatacgtgcagaccgaagtcgacggcaagcctacgggttggaaggcgtacttcgac
ggtggcaagtggacggttgaagacaagcgtacgaaggccaaagctgagtaa
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