Pseudomonas sp. RU47: CCX46_20295
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Entry
CCX46_20295 CDS
T11150
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
psru Pseudomonas sp. RU47
Pathway
psru00071
Fatty acid degradation
psru00280
Valine, leucine and isoleucine degradation
psru00310
Lysine degradation
psru00362
Benzoate degradation
psru00380
Tryptophan metabolism
psru00410
beta-Alanine metabolism
psru00640
Propanoate metabolism
psru00650
Butanoate metabolism
psru00907
Pinene, camphor and geraniol degradation
psru00930
Caprolactam degradation
psru01100
Metabolic pathways
psru01110
Biosynthesis of secondary metabolites
psru01120
Microbial metabolism in diverse environments
psru01200
Carbon metabolism
psru01212
Fatty acid metabolism
Module
psru_M00087
beta-Oxidation
psru_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
psru00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
CCX46_20295 (fadB)
00650 Butanoate metabolism
CCX46_20295 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
CCX46_20295 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
CCX46_20295 (fadB)
00310 Lysine degradation
CCX46_20295 (fadB)
00380 Tryptophan metabolism
CCX46_20295 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
CCX46_20295 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
CCX46_20295 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
CCX46_20295 (fadB)
00930 Caprolactam degradation
CCX46_20295 (fadB)
Enzymes [BR:
psru01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
CCX46_20295 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
CCX46_20295 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
CCX46_20295 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
CCX46_20295 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AZZ77393
LinkDB
All DBs
Position
complement(4561313..4563460)
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDTIKADASIKGVIVSS
GKDVFIVGADITEFVDNFKLPDAELVAGNLEANKIFSDFEDLNVPTVVAINGIALGGGLE
MCLAADYRVMSTKAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAIEWIASGKENRPEDAL
KVSAVDAVVAPEKLQEAALELIKRAISGEFDFKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLIGLFLNDQEL
KKKAKAYDEIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL
LVGRVDKGRMTAAKMAEVLNAIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEAQVK
EDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDVLYEAKRLGQKNGKGFYAYEADKKGKQ
KKVADPSVLEVLKPIVYEQREVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGALYHPTAKLREMAKNGQSFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaagctcttgaaagtggcatcgtcgaattg
aaattcgacctcaagggtgagtccgtcaacaagttcaaccgtctaaccctgaacgaactg
cgtcaggccgtagacaccatcaaggcagatgcttcgatcaagggcgtgatcgtcagcagt
ggcaaggacgtgttcatcgtcggcgccgacatcaccgaatttgtcgacaacttcaagctg
ccggatgccgagctggttgctggcaatctcgaagccaacaagatcttcagcgatttcgaa
gacctcaatgtcccaaccgtagtggccattaatggcatcgcactgggcggcggtctggaa
atgtgcctggcggctgactatcgcgtcatgtcgaccaaggccaagatcggtctgccggaa
gtcaaactgggcatctacccaggcttcggcggcaccgtgcgtctgccgcgcctgattggt
gtcgacaacgccatcgaatggattgcctccggtaaggaaaaccgccctgaagacgccctg
aaagtcagcgccgtcgacgccgtggttgctccggagaagctgcaggaagcggctcttgag
ctgatcaaacgcgccatctccggcgagttcgacttcaaggccaagcgtcaacccaaactt
gaaaaactcaagctgaacgccattgaacaaatgatggcattcgaaaccgccaaaggtttc
gtcgccggtcaggctggcccgaactacccggcgccggttgaagcgatcaagacgatccag
aaagccgcgaacttcggtcgtgacaaggcgctggaagtcgaagcagccggtttcgtcaag
ctggccaagacctctgccgcgcagagcttgatcggtctgttcctgaacgatcaggagctg
aagaaaaaggccaaggcctacgacgaaatcgccaaagacgtgaagcaggccgctgtactc
ggcgccggcatcatgggtggcggtatcgcttatcagtcggcctccaaaggtacgccgatc
ctgatgaaggacatcaacgagcacggtatcgagcagggtctggccgaagccgccaaactg
ctggttggccgcgttgataaaggtcgcatgacggctgcgaaaatggctgaagtgctcaac
gccattcgtccgaccctgtcctacggcgacttcggtcacgtcgatctggttgtcgaagct
gtggtcgaaaacccgaaggtcaagcaagccgtactggctgaagtcgaagctcaggtcaaa
gaggacaccatcctcgcgtccaacacctcgaccatttccatcagcctgctggccaaggcc
ctcaagcgtccggaaaacttcgttggcatgcacttcttcaacccggtgcacatgatgccg
ctggtagaagtgatccgtggcgagaagtcgagtgagctggcggttgccaccaccgttgcc
tacgccaagaaaatgggcaagaacccgatcgtcgtcaatgactgcccgggcttcctcgtt
aaccgcgtactgttcccgtacttcggcggtttcgccaagctggtaagcgccggtgtggac
ttcgtccgtatcgacaaggtcatggaaaaattcggctggccgatgggcccggcgtacctg
atggacgtggtcggcatcgacaccggtcaccacggtcgcgacgtgatggctgaaggtttc
ccggatcgcatgaaggatgaccgtcgttcggccatcgacgtgctgtacgaagccaagcgc
ctgggccagaagaacggcaagggcttctacgcctacgaggccgacaagaaaggcaagcag
aagaaagttgccgatccatcggtgctggaagtgctcaagccgatcgtttacgagcagcgc
gaagtcactgacgaagacatcatcaactggatgatgatcccgctgtgcctggaaaccgtg
cgttgcctggaagacggcatcgttgaaactgccgccgaagccgacatgggtctggtctac
ggtatcggtttccctccattccgtggcggtgcgctgcgctacatcgactcgatcggtgtt
gccgagttcgttgccctggctgaccagtacgctgatttgggcgcgctgtaccacccaacc
gcgaagctgcgcgaaatggccaaaaacggccagagcttcttcggttaa
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