Pseudomonas sp. RU47: CCX46_20875
Help
Entry
CCX46_20875 CDS
T11150
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psru Pseudomonas sp. RU47
Pathway
psru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCX46_20875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psru03019
]
CCX46_20875
03009 Ribosome biogenesis [BR:
psru03009
]
CCX46_20875
Enzymes [BR:
psru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCX46_20875
Messenger RNA biogenesis [BR:
psru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCX46_20875
Ribosome biogenesis [BR:
psru03009
]
Prokaryotic type
rRNA helicases
CCX46_20875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZZ77500
LinkDB
All DBs
Position
complement(4689674..4691347)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPST
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgcttttaatcttaacccgaatattcttgcagcc
gtcgcagcgactggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggtcaggcgcaaaccggtaccggtaaaaccgccgcgttc
gcactgcctattctgcaccgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgcgccgatgggcccacaactgaaa
gcaatccgtaatggtgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgtgatgaaaaagttctgtcgaccgtgaaccacctggttctcgacgaagctgacgaa
atgttgaaactgggcttcatggatgacctggaagtcatcttcaaggctctgccatcgacc
cgtcagaccgttttgttctcggctaccctgccgcagtcgatccgcgccattgctgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacttcggccgttctcagcttgctg
gaagtggaagatttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggat
ctggccagcgccctcgacgccaaaggctacaaagccgcggcgctgaacggtgacatcgcc
cagaaccagcgtgagcgcgtcatcgactcgctgaaagatggccgtctggacatcgttgtc
gcgaccgacgttgctgctcgtggtctggacgttccgcgcatcactcacgtgttcaacgtc
gacatgccgtacgatccggaatcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgcgtaaccggtcagaaagttgccgaagtacgcctgccggacgctcaagccgttctc
gatgcgcgcatcaagaaactgaccaacagcctgtcgccgctggtcgctgacgccgaatcg
actcacggtgagctgctcgatcgtctgactgcagacatcggctgcaccccgcgtgctctg
gctgctgcgctgctgcgcaaagccaccaacggtcaagcgctgaacctggctgcgatcgag
aaggaacgtccactggtgccgaacaacgcaccgcgtggcgaccgtcctgagcgcaccggt
gatcgtcctgatcgtggtgaccgcgagcgtcgcgcgccaatgcctttgggcgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgcgaagaacctgctgggc
gccatcctcaacgaaggtggtctggcccgtgaagcgatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggacaaactcctgaccaaactgaag
gacactcgcgttgccggtaagcagctgaaactgcgtcgctatcgcgaagattga
DBGET
integrated database retrieval system
