Pseudomonas sp. RU47: CCX46_23385
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Entry
CCX46_23385 CDS
T11150
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psru Pseudomonas sp. RU47
Pathway
psru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CCX46_23385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psru03400
]
CCX46_23385
Enzymes [BR:
psru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
CCX46_23385
DNA repair and recombination proteins [BR:
psru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CCX46_23385
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CCX46_23385
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CCX46_23385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Phage_tail_APC
Motif
Other DBs
NCBI-ProteinID:
AZZ77956
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All DBs
Position
complement(5217770..5219200)
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AA seq
476 aa
AA seq
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MTSIFWYDYETTGINPRNDRPLQVAGIRTDHALNEIDEPVNLYCQPSEDILPHPAACAIT
GITPSQLAEKGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRAACALRPDGLVWPTDDEGRVTLKLERLTAANNIDHGHAHEALSDV
RATIALARLIREKQPKLYDWLFQLRSKQKVMDQIRLLQPLVHISGRFSAARSYVGLVLPL
AWHPKNRNALIVCDLHLDPQGLLDLDAQTLRQRLYTRRDDLLEGELPVPLKLIHINRCPV
VAPLAVLRAQDQQRLGLDMALYQQRALRLTDAQQVWKDKVAAIYASEDFTPSEDPEQQLY
DGFIGDRDRRLCEQVRSADPAQLAQEQWPFDDERLPELLFRYRARNFPETLNFEEQERWR
IFCQQRLSAPEYGAPNTLKSFSEAAEQWSLNATPLQSEVLNEWQNYVQALRKRLNL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcaatcttctggtacgactacgaaaccactggcatcaatccgcgcaacgatcgc
ccgttgcaggtggccggaattcgcaccgaccatgcgctcaacgagatcgacgagccggtg
aatctctactgccagcccagtgaagacatcctgccgcatccggcggcgtgcgcgatcacc
ggcatcaccccgagccagctcgccgaaaagggtttgagcgaagcggacttcatgacgcgg
gttcacgctcagctggccgcccccggcacctgcggggcgggatacaacacgctgcgtttc
gacgacgagatgacccgctacagcctgtatcgcaacttcttcgacccctacgcgcgggag
tggcagggcggcaacagtcgctgggatctgatcgatgtggtgcgcgctgcttgcgcgttg
cgtcctgacggtctggtctggccgaccgatgacgaaggccgggtgacgctcaagctcgaa
cgcctgacggcggcgaacaatatcgatcatggtcacgcccacgaagccttgtcagacgtg
cgcgccaccatcgcactggcgcggttgatccgcgaaaaacagccgaagctgtatgactgg
ctgtttcagttgcgcagcaagcagaaagtcatggaccagattcgcctgttgcagccactg
gtgcatatttcagggcgtttctcggcggcacgcagttatgtcggcttggtgctgccactg
gcctggcacccgaaaaaccgtaatgcactgatcgtctgtgacctgcacctcgacccgcag
ggtttgctggatctcgacgcgcaaaccctgcgccagcgtttgtacacgcgtcgcgatgac
ttgctggaaggcgagttgccggtaccgctcaagctgattcacatcaaccgttgcccggtg
gtggcgccgcttgcggttttgcgcgcgcaggatcagcagcgtctggggctggacatggcg
ctgtatcaacagcgagcgctgcggctaactgacgcacaacaagtttggaaagataaagtt
gcggcaatttatgccagcgaagatttcacgccgagcgaggatcccgaacaacagttgtac
gacggatttatcggtgatcgcgaccgccgtctatgtgagcaagtgaggagcgccgacccg
gcacaactagcgcaagagcaatggcctttcgatgacgaacgtttgcccgaattactcttt
cgatatcgcgcgcgtaactttcccgagacgttgaatttcgaagagcaagaacgctggaga
atattttgtcagcagcggttgtccgcacctgaatacggcgcgccgaataccttgaagtct
tttagcgaggcagcagagcaatggtcacttaatgccacgccgctgcagagtgaggtgctc
aatgaatggcagaattatgtccaggcattgcgcaaacgtttgaatctttga
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