Pseudomonas sp. RU47: CCX46_26025
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Entry
CCX46_26025 CDS
T11150
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psru Pseudomonas sp. RU47
Pathway
psru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCX46_26025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psru03019
]
CCX46_26025
Enzymes [BR:
psru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCX46_26025
Messenger RNA biogenesis [BR:
psru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCX46_26025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AZZ78451
LinkDB
All DBs
Position
complement(5803726..5805063)
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AA seq
445 aa
AA seq
DB search
MTFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QLLAMEGPKVAANSARALILVPTRELAEQVHESVRQYAENLPLRTYAVYGGVSINPQMMK
LRGGVDVLVATPGRLIDLFRQNALKLDQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR
QTLLFSATFSDDIRLLAGQMLNDPLTVEVSPRNVAANTVKQWIVTVDKKRKAELFVHLMR
KNKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVA
TDVAARGLDIEDLPLVINFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNMLSAIE
MLTRQTLKRQNEPDFEPEHRVPDTDASGQVIKKPKKPKKPKASGGGGKRNLGKWVDSGET
QAPEPSVKPVRKVPVFNTGPRKRKP
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgccacccttggcctgatcgaacccttgctgcgctccctcgagaagctcggc
taccagaccccgacgccggttcaggcgcaagccattccggccgtgctggccggtcgtgac
ctgatggcagcggcccagaccggcaccggaaaaaccgccggtttcgctttgccactgctg
cagttgttggccatggaagggccgaaagtcgctgccaactcggcgcgtgcgctgattctg
gtgccgacccgcgagctggccgagcaggttcatgagtctgtgcgccagtacgccgaaaac
ctgccgctgcgcacttatgcggtgtacggcggcgtcagcatcaacccgcaaatgatgaag
ctgcgcggcggcgtcgatgtgctggtcgccacacccggtcgcctgatcgacctgttccgc
cagaacgcgctgaaactcgatcagctgcagactctggtgctggatgaagccgatcgtatg
ctcgacctgggcttctccgaagaactggcgaacatttaccgcatgctgccgaaaaagcgc
cagaccctgctgttctccgcgaccttttccgatgacatccgcctgctggccgggcaaatg
ctcaacgatccgctgaccgtcgaagtcagcccgcgcaacgtcgccgccaacaccgtaaag
cagtggatcgtcacggtggacaagaagcgcaaggctgaactgttcgtgcacctgatgcgc
aagaacaagtggaagcaggtgctggtgttcgccaagacccgcaacggtgtcgatgcgctg
gtggaaaaacttcagggcctcggtgtgaatgctgacggtatccacggcgacaaaccacag
gccacccgtcagcgcgcgctggaccgtttcaaactcagtgaagtgcagattctggtcgcg
actgacgttgcggcgcggggtctggatattgaagatctgccgttggtgatcaacttcgat
ctgccgatcgtggccgaggattacattcatcgtatcggtcgtactggccgtgcaggcgcg
acgggtgaggcaatctcgctggtatgcgcggatgaagtgaacatgttgtcggcgattgag
atgctgacgcggcagaccttgaagcgtcagaacgagccggatttcgaaccggagcaccgt
gtgccggataccgatgccagtggtcaggtgatcaagaagccgaagaaaccgaagaagccg
aaagcgtcgggcggtggtggcaagcgcaatctgggcaagtgggtcgacagcggcgagacg
caggcgccggagccttcggtcaagcctgtgcgcaaggtgccggtgttcaataccgggccg
cgtaaacgtaagccttaa
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