Pseudomonas sp. RU47: CCX46_27770
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Entry
CCX46_27770 CDS
T11150
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
psru Pseudomonas sp. RU47
Brite
KEGG Orthology (KO) [BR:
psru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psru03009
]
CCX46_27770
Enzymes [BR:
psru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CCX46_27770
Ribosome biogenesis [BR:
psru03009
]
Prokaryotic type
rRNA helicases
CCX46_27770
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
PRAI
Motif
Other DBs
NCBI-ProteinID:
AZZ78769
LinkDB
All DBs
Position
6169724..6171109
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AA seq
461 aa
AA seq
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MTTIATAFNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAF
GIGLLNPINPRYFGCQALVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIA
SLEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIIKTPER
RQTLLFSATYPVGIKQLASKFMRDPQTVKAEAFHDDTQIEQRFYEISPEDRMSAVTKVLH
HFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA
TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPGEAHRAQAIE
QLQKSPLNWDQVDNLKSQGLAPLQPPMTTLCIGAGRKDKVRPGDILGALTGDAGIPGAQV
GKIAIFDFQAYVAVDRTVAMQALQRLNDGKIKGRSLRVRIL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccatcgccaccgcttttaatactctgccgctgtccgccgccatgctggctaac
ctcgaatccctcggttatgcccagatgacgccgatccaggcgcagagcttgccggtgatc
ctcaaggggatggacctgatcgcccaggccaagaccggcagcggcaagaccgccgcgttc
ggcatcggcctgctcaacccgatcaacccgcgctacttcggttgccaggcactggtgatc
tgcccgacgcgtgagctggccgaccaggtcgccaaggaaatccgtcgtctggcccgtgcc
gaagacaacatcaaggtcctgaccctgtgcggcggcgtgtcgttcggcccgcagatcgct
tcgctggaacacggcgcgcacatcatcgtcggcaccccgggccgtatccagcagcacctg
cgcaagggttcgctggtcctcgatggcctgaacacgctgatcctcgacgaagccgaccgc
atgctcgacatgggtttctacgacgccatcgaagacatcatcatcaagaccccggaacgt
cgtcagaccctgctgttctccgcgacttacccggtgggcatcaaacaactggcgtcgaaa
ttcatgcgtgatccgcaaacggtgaaagccgaagcgttccacgatgacacgcagatcgag
cagcgtttctacgagatttccccggaagaccgcatgagcgcagtgaccaaagtcctgcac
cacttccgtccggcgtcctgcgtggcgttctgcttcaccaagcagcaggttcaggaaacc
gtcgatcacctgaccgccaaaggcatttccgccgtcggcctgcacggcgatctggaacag
cgtgaccgcgaccaggtgctggcgatgttcgccaaccgcagcacttcggtactggtcgcc
accgacgtcgccgcccgtggtctggacatcgatgcgctggacatggtgatcaacgtcgaa
ctggcgcgtgattcggaaatccacattcaccgcgtcggccgtaccggtcgcgctggcgag
aaaggcatcgcgatcagtctggttgcgccgggtgaagcgcaccgcgcgcaagccatcgaa
caactgcagaaatcgccgttgaactgggatcaggtcgataacctcaagtcccagggcctc
gccccgctgcagccgccgatgaccacgctgtgtatcggtgctggccgtaaagacaaggtt
cgtccgggcgacattctcggtgcattgactggcgacgccggcattcccggtgcacaggtg
ggcaagatcgcgatcttcgatttccaggcttacgtggcggttgaccgcaccgtggccatg
caggccttgcagcgtctgaacgacggcaagatcaagggccgttcgctgcgcgtacgcatt
ttgtaa
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