Pelodiscus sinensis (Chinese soft-shelled turtle): 102445355
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Entry
102445355 CDS
T02980
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03420
Nucleotide excision repair
pss04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102445355 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
102445355 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pss04121
]
102445355 (DDB1)
03400 DNA repair and recombination proteins [BR:
pss03400
]
102445355 (DDB1)
Ubiquitin system [BR:
pss04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
102445355 (DDB1)
DNA repair and recombination proteins [BR:
pss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
102445355 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
102445355 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
102445355
NCBI-ProteinID:
XP_014431230
Ensembl:
ENSPSIG00000013275
LinkDB
All DBs
Position
Unknown
AA seq
1143 aa
AA seq
DB search
MEAGLKYPLRRGVQGVSRLLSLAGHFTSAEDLNLLIAKNTRLEIYVVTPEGLRPVKEVGM
YGKIAVMELFHPKGENKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSE
TGIIGIIDPECRMIGLRLYDGLFKVIPLERDNKELKAFNIRLEELQVIDVKFLYGCQAPT
ICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESI
TYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTL
KDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLSVDSNEQGSYVVAMETFTNLG
PIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDS
HRETDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSTSVR
LVTQEPKALVSEWREPKGKNISVASCNSSQVVVAVGRALYYLEIQPQELRQISCTEMEHE
VACLDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFE
NSHYLLCALGDGALFYFGLSIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPT
VIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPL
YESPRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSSSKLFSSSTAP
HETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVY
PEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEK
ELRTECNHYNNIMALYVKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAV
EILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNL
GETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFH
TERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELT
RIH
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaggattgaagtaccccttgcggcgcggggtgcagggggtgagcaggctgctt
tctctcgcaggacacttcacttccgccgaggacctgaacctgctgatagcgaagaacacc
cgccttgagatctatgtggtcacgccggaggggctgcggcccgtcaaggaggtgggcatg
tatggcaagatcgccgtcatggagctcttccacccaaagggggagaacaaggatctgctg
ttcatcttgacagccaagtacaatgcctgtatccttgagtacaagcaaagtggtgagagc
attgatatcatcacccgtgcccatggcaacgtgcaggatcgcattggtcggccctctgag
acgggtataattggcatcattgacccagagtgtcggatgattggactgcggctctatgat
ggcctcttcaaggtcattcctctggagcgggacaacaaggagttaaaggcctttaacatc
cgcctggaggagctgcaggtcatcgatgtcaagttcctctatggctgccaggctcctacc
atctgctttgtttaccaggaccctcagggtcgccatgtcaaaacatatgaggtgtcccta
cgagagaaggaattcaacaaaggtccctggaaacaggagaatgtagaggctgaagcgtcc
atggtaattgcagtgcccgagccctttggaggagcaatcatcattgggcaagagtccatc
acctaccacaatggagataaatatttggctatagccccacctatcatcaagcaaagtaca
atcgtgtgccacaaccgcgtggatcccaacgggtcccgttacctcctgggggatatggag
ggccgcctcttcatgctgctattggagaaggaggagcagatggacggcacggtcaccctg
aaggacctgcgtgttgagctgcttggagagacctccatcgcggagtgcctgacttaccta
gacaatggtgttgtctttgtcggctctcgccttggggactcccaacttgtgaagctcagc
gtggacagcaatgaacaaggctcctacgtagtagccatggaaaccttcaccaacctgggc
cccatcgtggacatgtgtgtggtggacctagagagacagggccaagggcagctggtcacg
tgctctggcgcctttaaggagggctccttgaggatcatccggaatgggattgggattcac
gaacatgccagcatcgacttgccagggattaaaggcctgtggccattgaggtcagactca
caccgtgaaactgacaacaccttggtgctatcgtttgtgggccagaccagggttctgatg
ttaaatggggaggaagtggaggaaactgagttgacaggatttgtggatgatcagcaaaca
ttcttctgtggcaatgtagcccatcagcaactgatccagatcacgtctacctctgtgcgg
ctggtcactcaggagcccaaagccctggtgagtgaatggagagagcccaaggggaagaac
attagtgtcgcttcctgtaacagcagccaggtggtggtggctgtggggcgagcactctac
tacctcgagatccagccccaggagctcaggcaaataagctgcacagagatggagcatgag
gtggcctgcctggacatcacaccattgggagactccaatggcatgtcgcctctgtgtgcc
atcggcctctggaccgacatctcggcccgcatccttaagctgccctcgtttgagctgctg
cacaaggagatgctgggaggcgagatcatcccccgctccattctgatgaccacctttgag
aacagccattatctcctctgtgccctgggggacggggctctcttctactttgggctcagc
attgagacaggtttgctgagtgaccgcaagaaagtgaccctgggcacccagcccaccgtc
ctgaggaccttccgttcactctccaccaccaacgtctttgcctgctccgaccgccccact
gtgatctacagcagtaaccacaagctggtcttctccaacgtcaacctcaaggaggtgaac
tacatgtgcccgctcaactcggatggctaccctgacagtctggcattggccaacaacagc
accctgacaattggcaccatcgacgagatccaaaagctgcacatccgcacggttcccctc
tacgagtcgcccaggaagatctgctatcaggaggtgtctcagtgcttcggcgtgctttca
agtcgcatcgaggtgcaagatgccagtgggggcaccactgcactgaggcccagtgccagc
acccaggccctgtccagcagcgtcagctccagcaagttgttttctagcagcactgcccca
cacgagacatcctttggtgaggaggtggaggtgcacaatctactcatcatagaccagcac
acctttgaagtgctacacgctcaccagtttctgcagaatgaatatgccctcagcctggtc
tcctgcaagctgggcaaggaccccaacacgtacttcattgtgggcacggccatggtgtat
cccgaggaggctgagcccaagcaaggccgcatcgtagtcttccactactcagatgggaaa
ctgcagagtttggctgagaaggaagtgaaaggggctgtgtattccatggtggagttcaat
ggcaagctcctagccagcattaacagcacggtgcgtctctatgagtggacagcagagaag
gagctgcgcacagaatgtaaccattacaataacatcatggctctctatgtgaagaccaaa
ggggacttcatcctggtcggagatttgatgcgctctgtcctgcttcttgcctacaagccc
atggagggtaactttgaggagattgctcgagacttcaacccaaactggatgagtgctgtg
gagatcttggatgatgacaatttcctaggagcagagaatgcttttaacctgtttgtgtgc
cagaaggacagcgcggccacgactgacgaagagcgccagcatttgcaggaagtggggctg
ttccacctgggggagtttgtcaacgtgttctgccacggctctttggtcatgcagaacctg
ggcgagacatccacgccgacacagggctcggtgctctttggcacggtcaacggaatgatt
gggctggtgacctcactgtcggaaagctggtacaacctcctgctggatatgcagaacaga
ctcaataaagtcatcaaaagcgtgggcaaaattgagcactccttctggagatcgtttcac
actgagcgcaagacggagccagccacaggattcatagacggtgatttgattgaaagtttc
ttggacatcagccggcccaaaatgcaggaggtagtggcaaacctacagatcgacgatggc
agtggcatgaagagagaggccaccgtggatgacctgataaagatcgtggaggagctgacc
cggatccattaa
DBGET
integrated database retrieval system
