Pelodiscus sinensis (Chinese soft-shelled turtle): 102445411
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Entry
102445411 CDS
T02980
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss04510
Focal adhesion
pss04512
ECM-receptor interaction
pss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102445411 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102445411 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102445411 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pss00536
]
102445411 (COL1A1)
Glycosaminoglycan binding proteins [BR:
pss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102445411 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
102445411
NCBI-ProteinID:
XP_025038032
Ensembl:
ENSPSIG00000006133
LinkDB
All DBs
Position
Unknown
AA seq
1306 aa
AA seq
DB search
MFSFVDSRLLLLIAATVLLTKGQGEDDVPSGNCIQDGLTYSDKDVWKPEPCQICVCDSGN
ILCDEVICEDTSDCPNAEIPFGECCPICPDSQASPSYPETTGVEGPRGDPGPRGDRGPPG
PPGRDGIPGQPGLPGPPGPPGPPGLGGNFAPQLSYGYDEKSVGGLSMPGPMGPAGPRGLP
GPPGSPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGAPGPQ
GARGLPGTAGLPGMKGHRGFSGLDGAKGDTGPAGPKGPTGPAGPPGFPGAVGAKGNPGSD
GQPGAKGATGNPGSDGQPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNNGEP
GAPGNKGDAGAKGEPGPVGVQGPPGPSGEEGKRGSRGEPGPAGLPGPAGERGAPGSRGFP
GSDGIAGPKGPAGERGSPGPAGPKGSPGESGRPGEPGLPGAKGLTGSPGSPGPDGKTGPT
GPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKPGERGTPGPVGAVGAPGKDGEA
GAQGPPGAAGPAGDVSLCFPAPLPSAQGLPGPAGPAGESGKPGEQGAPGDAGAPGPAGAR
GERGFPGERGVQGAPGPQGPRGSNGAPGNDGAKGDAGAPGSPGNQGPPGLQGMPGERGAA
GLPGARGDRGDAGPKGADGTPGKDGPRGLTGPTPPPGPAGAPGDKGESGPSGPAGPTGAR
GAPGDRGEPGPPGPAGFAGPPGSDGQPGAKGETGDSGAKGDAGPPGPAGPTGAPGPSGAV
GAPGPKGARGSAGPPGATGPPGPSGNIGLPGPPGPSGKEGSKGPRGETGPAGRSGEPGPA
GPPGPSGEKGSPGSDGAPGSPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ
GPSGPSGERGPPGPVGPPGLAGPPGPAGRQGSPGAEGAPGRDGAAGPKGDRGETGPAGAP
GAPGAPGAPGPVGPSGKNGDRGETGPAGPAGPAGPAGARGPAGPQGARGDKGETGEHGDR
GMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSAGKDGLNGLPGPIGPP
GPRGRTGDVGPAGPPGPPGPPGPPGAPSGGFDFSFMPQPPQEKAHTDSRYHRDERANYWI
DPNQGCNLDAIKVYCHMETVGRRTSWLPLLVSLSSMQFEYGGEESNPADVAIQLTFLRLM
STEASQNITYHCKNSVAYMDQETGNLKKALLLQGSNEIEIRAEGNSRFTYGVTEDGCTSH
TGTWGKTVIEYKTTKTSRLPVIDVAPMDVGAPDQEFGIDVGPVCFL
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattctcggttactgctgttgatagcagcgactgtactactcacc
aaaggccaaggagaagacgacgttccatctggaaactgcatacaggacggactaacatac
agcgacaaagatgtgtggaaaccggaaccctgccagatctgcgtgtgcgacagcggcaac
atcttgtgcgacgaggtgatctgcgaagacacctcggactgccccaacgctgagatcccc
ttcggagaatgctgccccatctgccccgacagccaggcctctccttcctacccagaaacc
actggagtagagggacccagaggagaccccggccccagaggagacaggggaccccccggc
ccacctgggagagacggcattcccggacagcctggtcttcctggacccccaggcccccca
ggacctccaggccttggcggaaacttcgcacctcaactctcttacggttatgacgagaaa
tccgttggcggcctgtccatgcccggccctatgggtccagctggtccccgcggtctcccc
ggccctcctggttctcccggtcctcaaggtttccaaggtcctcccggcgagcctggcgag
cctggcgcttctggtcccatgggtccccgcggtcctgctggcccccctggcaagaacgga
gatgatggtgaagctggaaagcccgggcgtcccggcgagcgtggtgctcccggcccccag
ggtgcacgtggtctgcccggaactgctggcctgccaggcatgaagggtcacagaggcttc
agtggtctggatggtgccaagggtgatactggtccagctggccccaagggtccaactggc
cccgctggcccccctggcttccccggagctgtcggtgctaagggcaaccctgggagcgac
ggacaacctggtgccaaaggtgccactggcaaccctgggagcgacggacaacctggtgcc
aaaggtgccactggtgctcctggcattgctggcgctcccggcttccccggtgctcgtggt
ccctccggcccccagggtcccagcggtgcccccggccccaagggtaacaacggtgaacct
ggtgctccaggcaacaagggagatgctggcgctaagggagaacctggtcctgttggtgtc
caaggcccccctggtccatccggcgaagaaggcaagcgagggtcccgcggagagcccggc
cccgctggtctgcccggccctgctggcgaacgtggcgcccccggaagccgcggtttccct
ggctctgatggcattgccggtcctaagggtcccgctggtgaacgtggctcccccggccct
gctggccccaaaggatcccctggtgaatctggacgtcccggagagcctggtctgcccggt
gccaagggtctgactggaagccccggtagcccaggacccgatggcaagactggccccact
ggtcccgctggccaagacggtcgccccggcccccccggccctcccggtgccagaggtcag
gctggcgtgatgggtttccctggacctaaaggtgctgctggtgagcccggcaaacccggt
gaaagaggcactcccggacccgtcggcgctgtgggtgctcctggtaaagatggtgaagct
ggtgcccagggacctcctggcgctgctggccccgctggagatgtgtccctttgctttccc
gcgccgctcccctctgcccagggtctgcccggccccgctggacccgctggtgaaagtggc
aagcccggtgagcagggcgcccccggagacgctggtgcccccggtcctgctggtgcaaga
ggcgagcgagggttccccggcgagcgtggtgtccaaggtgctcccggtccacagggtcca
cgtggttctaatggtgctcctgggaacgacggtgctaagggtgatgctggtgctcctggc
agtcctggaaaccaaggcccacccggtctgcagggtatgcccggtgaacgcggtgctgcg
ggtctgcccggcgccaggggagacagaggtgatgctggtcccaaaggtgctgacggaact
cccggcaaagacggcccaagaggtctgactggccccacacccccccccggcccagcgggt
gctcctggtgacaagggtgaatctggtccctccggccccgctggtcccaccggcgctcgt
ggtgctcccggagatcgtggtgagcccggcccccctggtcccgctggattcgctggcccc
cctggttctgacggccaacctggtgctaaaggtgaaactggcgactctggtgctaagggc
gatgctggtcccccaggccctgctggacctactggtgctcctggcccctctggtgctgtt
ggtgctcctggacccaaaggtgctcgtggtagcgctggacctcctggtgctactggtccc
cctggcccctctggaaacatcggtctccccggccccccaggccccagcggaaaggaaggt
agcaagggaccccgtggtgagactggccccgctggccgcagcggcgaacccggccccgcc
ggcccccccggaccctctggtgagaagggctctcccggttccgacggtgcccctggctcc
cctggcaccccaggcccacagggtatcgctgggcagcgcggtgtcgtcggcctgcctgga
cagagaggcgagagaggattccctgggctccctggcccatctggcgaacctggcaaacaa
ggtccatctggcccctctggtgagcgtggtcctcctggccccgtcgggccccccggcttg
gccggcccccctggcccagctggacgtcagggctctcctggtgcggaaggtgcccccggc
cgcgacggagctgctggtcccaagggcgaccgtggtgagactggcccagctggtgcgcct
ggtgctcccggtgcccccggcgcccccggccctgttggtccctctggcaagaatggagat
cgtggagagactggccccgctggtcccgccggccccgctggtcctgctggtgctcgtggc
cctgctggcccccaaggtgcccgcggcgacaagggtgaaactggagaacatggcgacaga
ggcatgaagggtcacagaggattctctggtctccagggtccacctggccctcccggctct
cctggcgagcaaggtccctctggagcttccggtcccgccggcccacggggtccccctggc
tccgccggttccgctggcaaagatggtctgaacggtctccccggccccattggcccacca
ggtccacgtggtcgcactggtgacgttggtcccgctggtccccccggacctcccggaccc
cctggtccccccggcgcacccagcggcggctttgacttcagcttcatgccccagccccct
caggagaaggcccacaccgacagccgctaccacagagacgaacgcgccaactactggatt
gaccccaaccaaggctgcaacctggatgccatcaaggtctactgtcacatggagaccgtg
gggagaaggaccagctggctccccctgctggtctctctctcttccatgcagtttgaatat
ggtggtgaggaatccaacccagctgacgtcgccatccaactgaccttcctgcgcctgatg
tccaccgaggcctcccagaacatcacctaccactgcaagaacagcgtggcctacatggac
caggagaccggcaacctcaagaaggctctgctgctccagggctccaacgagatcgaaatc
agagcagagggcaacagccgcttcacctacggagtcaccgaggatggctgcacgagtcac
accggcacctggggcaagacagtcatcgaatacaagacaacgaaaacctcccgcctgccc
gtcattgacgtggcccccatggacgttggtgcgccagatcaggaattcggaatcgacgtc
ggccccgtctgcttcttgtaa
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