Pelodiscus sinensis (Chinese soft-shelled turtle): 102446228
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Entry
102446228 CDS
T02980
Symbol
FOCAD
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pss03019
]
102446228 (FOCAD)
Messenger RNA biogenesis [BR:
pss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102446228 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
102446228
NCBI-ProteinID:
XP_014432470
Ensembl:
ENSPSIG00000018232
LinkDB
All DBs
Position
Unknown
AA seq
1802 aa
AA seq
DB search
MSDDIRKRLEFPNTLIQIQAAGHLIAAVLKENVLSDKIRQSTNQTPALNLLWEACCSENV
AVRTACCQGLVALVAQDYAEFNYILNTALNLIPSARNVHGLVKIIGKLLQMQALTVGKNG
DEAVWDLYAIRYPPHPLISVLENRPDCWPVLLQQITVFFQQCPERAQSSCVCIMTPFLRY
LYCEPSQLRENAELRMGLLKIILEPRGSESREAPSTLEHLILQLLCDFIPHFQIKDLPQV
TEALFFLEELFRSLLRYPVFWKAQLSRLCLQMLCFCEICLNMTGECSSTICLIEQNVEIL
HEDFPVEQAIIGLGLLLLQSPACQQKPILNLGCKLLSCPETQKIPAMAIILVMPVLQILS
STAVEDCISEEESAPTRQQLAINLLEMVQQEGIKDKKKQSALKVNFPITSTYNLLYTTWR
ILEHMEEKSAVSAWLSSIKSVLPFMTQVPTHVFLLLAYLLVQENGESLRGVLSATVDIAK
SDCSQVPNLIPVLMFKLGMSLEPSLYRDILYTLPALAVHKICISQILRVIQVLGSTPKLR
PVTLRLMTSLWEKQDRVYPELQKFMAMSDMPSLSTGKDTQWEKVIAKAASIRDICKQRPY
QHGADMLAAISQILNECTKTDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTR
PLILKTLNELFGLVPSLTVNTNEYETFKTQIVSLLWSHTQNKDPIVAISAYRSLSEFSRE
EHTILHLPEQARPEIVPSEEMEANTEKETEVDLSVPGSSYIKLLSLTFPSVLPAFEEFVT
SLVKQEMASMPRGVYHSALRGGATRSDQGKTVAGVPNFMLQMYERNKHPGLKPGLAAGML
LCYDLPIHMGKDGKPISRFLASRGRNFPQMLIALIHEVGIQPSEWHRSLLLPECWLGFMS
RTYHAVLQGRQAELEMQLKHGKEDPEEVQYKQFTAWLWVRDMLTDVIKGASKESPVVKGN
SLLALTGLAVAVAKHENSLSLDTEVGPQTEPDFLPTKHWISMVIETLLSIVNSRYRAKGQ
VFPWFYQKSYSGENTASAIARSCAATALSLLVPVFIASYKEKVEEVLSVLTARLPGKPNA
DESQAVQIHIGLALGMFISRLCEEKASDISGQQMNLLLMKSLDALENCCFDTSLEYNTGC
ILGVGLVLSFMSHSSETESRVHVSASLRKLCNYLDDSKEQSRTFQELXXXFSVAFSCISA
FSMKIIEAVEAEEIMHKLQMLAENNQQTSGFALALGSVIHGLSVCGHGKAEDLSNRLLPA
WMKIVLAEGSPTMQRLAAVNGLVALVGSEASIIQLKSEAIQSSQFQNKLNEIIKTLTQII
SFSGVIGLQTNAAWLLGHLHQSSLSSTQNRMSVPPDFRYLPENSFIRAAIDFAIEGGKKG
PESIPPQLVKVALAPIASVGESYQYPPVNWASVLSPLMRLNFGEEIQQLCIELSVTQAQS
AQSAAMLLGRWIVPPLVYSLSMKTRKYLFNSLSLWMKHVAEDKLQTFTEVFLVQHFETKH
SKNHELCQNILQGLNQAMKLPSPAQHCWTLLCQAVEKIFELLPNEIQRSEVEMYTEVAKC
LSEMTDVEVGRIAQFAKNNVEKATFIKVHLVSQGRLPLLSLNDVIGTAVRCQQKETIAWM
LLHGFYHARIISHENTGVLKRMDWLLEFMGYIRNVAYKSISIQNVDIKEAVDFLLWVFAA
SVVAWADHATPLLLGLSASWSPWKHKEILLELSADDFGKHPIEKLSVQETLTLLPNSMQL
LLAKEPWKEQTQKFIDWLMNIMESPEEVLSQASRDLLNATLLVLRFLPEFKKKAVWTKAY
GW
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgatattaggaagcggctagaatttcctaacacgcttattcagatacaggct
gcgggtcatcttattgctgcagtgctaaaagaaaatgttttatcagacaagatcagacag
tccactaaccagactcctgcattgaacttgctctgggaggcatgctgcagtgagaatgta
gctgtgcggacagcctgctgccaaggccttgtggcccttgttgcacaggattatgcagaa
ttcaattatattctcaatacagctctcaatctgattccctctgccagaaatgtacatggt
ttggtcaaaattattgggaaattactacagatgcaggcccttacagtgggcaaaaatgga
gacgaagctgtttgggatttgtatgcaatcaggtatcctcctcatccactaatcagtgta
cttgaaaacagacctgattgctggccggttcttctgcagcaaataacagtatttttccag
caatgtccagagagggctcagagttcatgtgtctgtataatgaccccatttctaagatac
ctgtattgtgaaccatcacaattgcgggagaatgctgaactgcgaatgggtctacttaaa
atcatacttgagccacgtggttctgagagcagagaagcaccctctacactagaacacctt
attcttcaactgctttgtgacttcattccacattttcagataaaggacttgccacaagta
acggaagcattgttctttctagaagaattattccggagtttgcttcgctaccctgtattt
tggaaagcccagttatctcggctttgtctgcagatgttgtgcttctgtgagatttgtctg
aatatgacaggggaatgttcatctacaatttgcttaatagagcaaaatgtggagatcttg
catgaagactttccagttgaacaggccataattggattgggtttacttctactccagagt
ccagcatgtcagcagaaacccatcttaaacctaggctgcaagcttctttcctgtccagaa
actcagaagattccagccatggctatcatcttagtgatgcctgtgttgcagatcttatcg
tcaacagcagttgaggattgtatatcagaggaagaatctgcccccacgaggcaacagttg
gctataaatcttttggagatggtgcagcaggaaggcataaaggataaaaagaaacagtca
gccttgaaggtcaactttcctataaccagtacatacaatttattgtatacaacgtggagg
atcctagagcacatggaagagaagtctgcagtgtctgcctggttatcttccattaagtca
gtattaccatttatgactcaagttcccactcatgttttccttttactggcttatctcctg
gttcaagaaaatggagagagtcttcgtggagtactgagtgccactgtggacatagccaag
tcagattgctctcaggtcccaaatctaatcccagttctaatgtttaagttgggaatgtca
ttggagccttctttgtatcgggatattttgtacactttgcctgctctggctgtacacaag
atctgcatatctcagattctacgtgtgatacaggtgctggggagcactccaaagcttaga
cctgttactttacgtctgatgacatccttatgggagaaacaggatcgggtttacccagaa
ctgcagaagttcatggcaatgtccgatatgccctctttgtccactgggaaggatacacag
tgggaaaaggtgatagctaaagctgcatccatcagagatatatgcaaacagaggccatat
caacatggagctgatatgttggctgcaatttcccagatattgaatgaatgcacaaaaact
gatcaagccacaccagctgctttagtgttacaaggtcttcatgcactttgtcaagctgag
gtggtttgtattcgctcaacatggaatgcactctcaccaaaattgagctgtgacacacgc
ccactcatcttaaaaacattgaatgaattgtttggcctggttccctcattaacagtgaat
acaaatgaatatgagacattcaaaactcaaattgtcagcttgctttggagccatactcag
aacaaggatcccatcgtagcaatttcagcatatagatctctgtcagaatttagtcgtgaa
gaacacaccatccttcatcttcctgaacaggcaagaccagaaattgttccatcagaagag
atggaggcaaatacagagaaggagacggaggtggatctttctgttcctggttcttcctat
atcaaactgttgtctctcacttttccttctgttttgccagcatttgaagagtttgtgacg
tcacttgtgaaacaggagatggccagcatgccccgtggtgtgtatcattctgcactgaga
ggaggggccacacgctcagatcaaggaaaaactgtagcaggagtcccaaacttcatgctt
caaatgtatgagaggaacaagcatccaggcctgaagcctggccttgcagctggcatgttg
ttatgttacgaccttccaatccacatgggcaaagatggcaaacctataagtcgttttctg
gctagtagagggcgcaatttcccgcagatgttaatagctcttattcacgaggttggcatc
cagccttctgaatggcaccgttctctcttgcttcctgagtgctggcttggatttatgagt
agaacgtaccatgcagttttacaggggagacaggcagagctggagatgcagttaaaacat
ggaaaagaggatcctgaagaggtgcagtacaaacaatttacagcctggctctgggtcaga
gacatgctgactgatgttatcaagggtgcttcaaaggagagcccagtggtaaaaggaaac
tctctcttagctttaactggccttgcagttgctgtagcaaaacatgaaaatagcctttct
ttagacactgaagtaggaccacagactgaacctgattttcttcccacaaaacactggatt
tctatggtgatagaaacgctccttagtattgtgaacagccgctatcgtgccaaaggtcaa
gttttcccatggttctaccagaaatcctattctggagaaaatacggccagtgctattgct
cgctcctgcgcagccactgctttgtctctcttggtgccagttttcattgcatcctacaag
gagaaggttgaggaagtcctgagtgtactgactgccaggttacctgggaaaccaaatgct
gatgagtctcaagctgttcaaatccacataggccttgctttggggatgtttatctcacgt
ttgtgtgaagaaaaagccagtgatatatctggccagcagatgaatctacttctaatgaag
tccctcgatgcattggaaaattgctgctttgacaccagtcttgagtacaacactggatgt
atcttgggtgtaggacttgttctttcatttatgagtcacagcagcgaaacagaatcacgg
gttcatgtctctgcctctctgaggaaactctgtaactacctggatgacagtaaagagcaa
agcagaacattccaggagctnnnnnnnnnnttctctgttgccttttcctgcatctctgct
ttcagcatgaaaattatagaggcagtggaggctgaagaaatcatgcacaagttgcagatg
ttagcggaaaataatcagcagacatccgggtttgctttggcattgggcagcgtaattcat
ggtttgtcagtctgtggacatgggaaagcagaagacttgagtaacagactgcttcctgct
tggatgaaaattgtgcttgcagagggatctcctactatgcagcgtctggctgctgtcaat
ggactggttgctttggtgggttctgaagcatccataatacagctgaaatctgaagctatc
cagtcctcccagtttcaaaataaacttaatgaaataattaaaaccctgactcagatcatc
agtttttctggggtgattggtcttcagacaaatgcagcctggcttttaggacaccttcat
caatccagtttgtcctcaacccagaatagaatgtctgtgcctccagacttcagatatttg
cctgaaaacagctttatcagggcagctattgactttgctattgaaggagggaagaaaggc
cctgaatccattccccctcagttggtgaaagtagctttggcacctatagcttcagtcggt
gaaagctatcaatatccacctgtgaactgggcttcagttctttctcctttgatgagacta
aactttggtgaagagattcagcaactatgtattgaactttcagtgacccaggctcaatca
gctcagagtgctgcaatgctcttggggaggtggatagtgccacctttagtctacagtctc
agtatgaaaaccaggaaatatctttttaattctttgtccctgtggatgaaacatgttgca
gaagacaaactacagacttttactgaagtgtttttagtacagcattttgaaactaagcat
tcaaaaaatcatgagctttgccagaatattttacaaggactcaaccaagctatgaaactt
ccaagccctgcccaacactgttggacccttctgtgccaggctgtggagaagatatttgag
cttttaccaaatgagattcagagaagtgaagtggagatgtacactgaggtagcaaaatgt
ctctcagaaatgacagatgtggaagttggccggattgcccagttcgctaagaacaatgta
gaaaaggccaccttcatcaaagttcatttagtttctcaaggccgattgcctttgttgagc
ttgaatgatgtgattggtactgcagtaagatgtcagcagaaagaaactattgcatggatg
ttgttgcatggtttctaccatgcccgaattataagtcatgaaaacacaggagtgttgaag
agaatggactggctgctagaatttatgggctatatcagaaatgttgcttacaagtcaata
tctatacaaaatgtggatattaaagaggctgtagacttcttgttgtgggtatttgcagct
tctgtggttgcctgggctgaccatgctacaccactgctgcttggcctcagtgccagctgg
tcaccatggaaacacaaagaaatactgctggaattgtctgcagatgattttggcaagcat
ccaattgaaaagctttctgtgcaggagactctgactctccttccaaacagcatgcagctt
ttgctggctaaagagccttggaaagaacaaacacaaaagtttattgactggctgatgaat
ataatggagagccctgaagaagtgctatctcaagcctccagagacttattgaatgctaca
cttctggtgttgaggtttctcccagagttcaagaagaaggcagtatggactaaggcttat
ggttggtaa
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integrated database retrieval system
