KEGG   Pelodiscus sinensis (Chinese soft-shelled turtle): 102446849
Entry
102446849         CDS       T02980                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pss00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102446849 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pss03041]
    102446849 (SNRNP40)
Spliceosome [BR:pss03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    102446849 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    102446849 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I WDR55 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WDR54 WD40_like PROPPIN
Other DBs
NCBI-GeneID: 102446849
NCBI-ProteinID: XP_014431328
Ensembl: ENSPSIG00000017063
LinkDB
Position
Unknown
AA seq 298 aa
MLLSGHEGEVYCCKFHPNGATLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAGGSADRFVYVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIILSASSDKRLYMGEIQ
NT seq 897 nt   +upstreamnt  +downstreamnt
atgctgctctcggggcatgaaggagaagtttactgttgcaagtttcaccctaatggagca
actttagcatctgcaggatttgacagactgatcttgctatggaatgtgtatggggactgt
gataattatgccactctgaagggacacagtggagcagttatggagttgcactataatact
gatggcagcatgctcttctcagcatccacggacaaaacggtggcggtgtgggacagtgag
actggagagagagtgaaaaggttgaaggggcacacgtcatttgttaattcctgttatcct
gcgaggcggggaccccagcttgtctgtaccggcagcgatgatgggacagtaaagctgtgg
gatatccgtaaaaaagcagctgtccagacatttcagaacacttaccaagtattagcagtg
accttcaatgacaccagcgatcagattatttcgggaggcatagacaatgatatcaaggta
tgggaccttcggcagaacaaactgacgtacaccatgagagggcatgctgactcggtgaca
ggcctcagtctgagttcagaaggctcttacttgctttccaacgcaatggacaatacagtt
cgtatttgggacgtgcgaccgtttgcccctaaagagagatgtgtgaagatattccagggg
aatgtgcataattttgagaagaatcttttgagatgctcatggtcaccagatgggagtaaa
atagcaggcggctcagcagacaggtttgtttatgtgtgggatacaacctccaggagaatt
ctctacaagctgccaggccacgctggctccgtaaacgaggtggcttttcatccagaggag
ccaattatactctctgcatctagtgacaaaagactgtatatgggagagatccagtga

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