Pelodiscus sinensis (Chinese soft-shelled turtle): 102449318
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Entry
102449318 CDS
T02980
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X3
KO
K24357
collagen type XX alpha
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
NDNF
FN3_Tor_3rd
DUF4998
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
102449318
NCBI-ProteinID:
XP_006132557
LinkDB
All DBs
Position
Unknown
AA seq
1472 aa
AA seq
DB search
MLIHSSFLFACTALGSHILGYVLGQGPSRLKLAVLSEDRLQMKWRETEGNTDGYKVQVKP
MAGDSEQEVMLKTKTPKATVGGLSPTKEYTLHIYVLEGSQETLFAKRKFVIQELKNILQA
RNNQKNTATAPGKSTPPVRNTATELIPEVKATSPALSETTTQTAKDRPERRRQKAAGAKG
PSETLQGKPNTEFSVTETPTALQTTQRSPAKSEQGDLGKEKHTKETLKRGSRFQCDTAAA
TDIVLLVDGSWSIGRNNFKFVREFLSALVSPFNIARDKIRIGLSQYSSDPRTEWNLNTYV
TRDEVLEAVRNLRYKGGNTFTGLALSHVLEQNLKPEAGSRADAVKLVILLTDGKSQDDVN
LSAQTLKNMGIELFAIGVKNADEAELRQVASEPLELTVYNVLDFPLLSSLVSRLTWVLCT
RIKEKLKSENTGSPVKNVSVTTGPHLSPTNLIISEVTSRSMQLTWTPPLRQPKKYRIVYY
PSRGGIPQEVVLDGSASSTQLVNLTSHTEYLVSVFPIYENAIGDGLRGMTSTSLSPPLSL
RASEVSHNSLRLSWQPASGATQYLVLCSAAPNGAEDDTKEVKVEQPEVLLDGLSPSTEYS
IAVYAMSGEEASDPTSIQETTLALSPPGHLSFSEISHGSVKVSWEAASRAVRAHRVTYVS
SRGSNAREIQVPSNASSTVLRPLSSRTQYFISVSSVYDEGNSFPVTGNVTTLTVPPPSAL
KVTELSGNNVQLQWEAAAASDVLVYQIKWNAVGEESSQELSVAGNLAAANLPGLKKNTEY
QISIWAYYKDGARSDTVSILHRTSSKSPPTNLVIDSETSTSLQVRWRPPGRHLQYYRVTY
APESDDRAQQTIMVSGKSSGVTLQSLLPNTAYKVMVSAVHDAGESDSVSTTGQTASALAK
PPPTRGFAPFKTEACPTLSSTEGSLQGFDMMEAFGLVEKEYASIKGVAMEPYVFSGTRTY
TLFRDIQLTRRTSEVLLSGIPPVHTISILLRLLPEAPKEPFAVWQLTDVNFQPLLGVILD
SSKKSLTYFNHDYKADLQEVTFDQQEVKKIFYGSFHKVHVAVSLFKTKLYLDCKKIAEKP
TNAMGSISTAGFIMLGKLTRTRGPRSGSAAFQLQSLHIVCSGSWAEEDRCCDLPALRNEE
TCPTLTPSCTCTSGIPGLPGPPGPPGSPGRRGPQGEQGEPGLKGEPGPPGQVGPEGPGGQ
QGSPGSQGITVQGPVGPPGIKGEKGDTGIPGMQGVPGAQGAPGRDGIQGAKGVRGLEGTA
GPPGPPGPRGFQGITGSRGSSGERGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVSQ
ACERMIQTHVLKFDSFIHEHTRKPVPMWEDMLKPGVPGPPGLPGTAGTRGEEGEDGIPGQ
QGKDGYPGERGSPGRQGEKGLPGASEEGIQGPRGRAGAPGEQVIGNPGLKGSPGSTGPPG
FPGARGHPGAPGYPGGCDFSGCYRASTRDFIP
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcacagttccttcttgtttgcctgcacggctttgggaagtcacatcctggga
tatgtcctcggtcaagggccaagccggttgaaactggccgtcctctcggaagacaggctg
cagatgaaatggagagaaacggaagggaacaccgacggatacaaggtccaagtgaagccc
atggcaggtgactcggaacaggaagtcatgctcaaaaccaaaacgcccaaagcgacggtg
ggggggctgagccccacgaaggaatacaccctgcacatctacgtgctcgagggctcccaa
gaaaccttgtttgccaaaaggaaatttgtgattcaggagctgaaaaacatcttgcaggct
agaaataaccaaaagaatacggcgaccgctccaggaaagagcaccccccctgtgagaaat
acagcaaccgagctcatcccagaggtgaaggcaacgtcccccgccctgagtgaaaccacc
acacagacagcaaaagacagacctgagcggagaaggcagaaggcagcaggagccaagggc
ccgagtgaaaccctccaagggaaaccaaacactgagttcagtgtgacagaaaccccgaca
gccctgcaaacgactcagcgcagccccgcaaaatccgagcaaggcgatctcggcaaagaa
aaacacacaaaggaaactttaaagagaggctctcggtttcagtgtgacacagccgcagcg
actgatatcgtcctgctggtggacgggtcctggagtatcggacgcaacaacttcaagttt
gtcagggagttcctgagcgccttggtatcccctttcaatattgcccgggataagataagg
atcggtttgtcccagtatagcagtgatccacggacagagtggaacctgaacacctatgtc
acaagggacgaggtgttagaggcggtgaggaacctgcgatataaaggtggcaacactttc
acaggccttgctttgtcccatgtcctagaacaaaatctgaaacctgaagctggctccagg
gcagatgcagttaagctggtgatcctcttgactgatggaaaatcacaggatgatgtcaac
ctgtctgcccagaccttgaaaaatatgggcatagaactatttgccattggggtgaagaac
gcagacgaggcagagctgaggcaggtggcatcagaacccctggagctcactgtgtataat
gtgctggatttccccctcctcagctcgctggtcagcaggctcacctgggtcttgtgcacc
aggatcaaagagaagctcaagagtgaaaacacaggcagtcccgtgaaaaatgtctcagtc
actactggtccccatctgagccccaccaaccttatcatatcagaggtgacttccagaagc
atgcagcttacttggacccctccgctaagacagccgaagaagtacagaattgtatattac
ccctccaggggtggaattccccaagaggtcgttctagatggatctgcctcctccacccag
cttgtcaacttgacctcgcacacagaatacctggtttcggtgtttcctatttatgaaaat
gccattggagatgggctcagaggcatgacctcgacatctttgtcaccacccctttccctg
agagcatccgaagtgagccacaacagcctgagactgagctggcagccagcaagtggagct
acgcagtacctggtgctctgttcagcagcccccaacggagcggaggatgataccaaagag
gtgaaagtggaacagcctgaggttctgctggatgggctgtctcccagcactgagtactct
atagcagtgtacgcaatgtctggggaagaggcaagtgatccgaccagcatccaggaaacc
accttggccctgagcccccccggacacctgagtttttctgagatcagccacgggtctgtc
aaggtcagctgggaagcagcttcacgtgctgtgagagctcaccgtgtgacctacgtatcc
agcagagggagcaatgcgagggagatccaagtccccagcaatgcgtcatccactgtgctg
agacctctgtcctctcgcacccagtacttcataagtgtcagctccgtttatgacgaaggc
aactcctttccggttaccggcaacgttaccacgttaacggttccgccaccaagtgccctg
aaggtgaccgagctctcaggaaacaacgtccagttgcaatgggaagcagccgctgcctct
gatgtccttgtttatcagattaaatggaatgcagttggagaagagagctcccaggagctg
tccgtggctgggaacctggctgctgccaacctgccagggttgaaaaagaacacggaatac
cagatatcgatctgggcgtattacaaggatggcgctcggagcgacactgtttctattctt
cacagaacctcttccaagagcccacccaccaacctcgttatagactcggagacctccact
agcctgcaggtccgctggagaccccctggccgccacctacaatactacagagtaacctat
gcccctgaatctgatgatcgcgctcagcaaactataatggtttctggtaaaagcagtgga
gtgaccctgcagtcgctgcttcccaatacagcttacaaggtgatggtttctgctgtccat
gacgcaggagagagtgactctgtatccactactggccaaactgcttctgctttggcgaaa
ccacccccaacgcgcggatttgctcctttcaaaacagaggcttgccccactctgagctcc
actgaaggctctctgcaaggatttgatatgatggaggcttttggattggtggaaaaagaa
tatgcctccattaaaggagtcgctatggaaccatatgtgttcagtggaacacgtacttac
actctcttcagagatattcagctcacccggagaacaagtgaagtgcttctctctgggatc
ccacctgtgcataccatcagcatcctccttcgactcctcccggaggctcccaaagagccc
tttgccgtgtggcagctaacagatgtgaacttccagccactcctcggcgttatacttgac
tccagtaagaaatccttgacctatttcaatcatgactacaaggctgatttgcaggaagtc
acctttgaccaacaggaagtaaagaagatattctatgggagctttcataaggtgcatgta
gctgtgagccttttcaaaaccaaactctacttggactgtaagaaaatagcagagaaaccg
accaatgccatgggaagcatctccactgctggcttcatcatgctaggaaaactgacaaga
accagaggtcccaggagtgggtcagcagctttccagctgcagtctttacacatcgtatgc
agtggctcatgggcagaggaagacagatgttgtgatctccctgcattgagaaacgaagag
acctgccctaccttgactccttcctgtacctgcacttcaggtatcccaggcctgccaggt
cctccaggcccacctggaagtcctgggagaagaggcccacaaggggaacaaggggaacca
gggctgaagggtgagccaggcccccccggacaagtcggacccgagggtcctggtggacaa
caagggtccccaggctcccaaggaatcaccgtgcaggggccagtgggcccccctggaatt
aaaggggagaaaggagacactggaatcccaggcatgcagggtgttcctggtgcccaggga
gctcccggcagagatggtattcagggagcaaagggggtgagaggactggaaggcacagca
gggcctccggggccaccaggacccaggggtttccaaggaataacgggttcccgaggcagc
agtggagagcgaggaccgccaggggatgtcggacccactggtctgcctggtccaaagggg
gaaaggggagagaaaggtgaacctcaatcgctggccacaatttaccagctggttagccag
gcttgtgagcggatgattcagactcatgtcttgaaattcgactcattcatccatgaacat
acaaggaagccggttcccatgtgggaggacatgttgaagccaggcgtacccggaccacca
ggtcttccgggtaccgctggtactagaggagaagaaggagaagatggtatcccaggacag
cagggcaaagatgggtatcctggtgaaagaggaagtcctggacgccagggtgagaaaggc
ctgcctggagccagtgaggaaggaatccagggacccagaggacgagctggcgctccagga
gaacaagtcataggaaacccaggtctgaaaggttcccctgggagcaccggtcctccaggt
tttcctggtgccagaggccatcccggggcacccggctacccaggtggttgtgatttctct
ggatgctacagggcaagcacaagagatttcatcccatga
DBGET
integrated database retrieval system
