Pelodiscus sinensis (Chinese soft-shelled turtle): 102450375
Help
Entry
102450375 CDS
T02980
Symbol
SETX
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pss03021
]
102450375 (SETX)
Enzymes [BR:
pss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102450375 (SETX)
5.6.2.5 RNA 5'-3' helicase
102450375 (SETX)
Transcription machinery [BR:
pss03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102450375 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
SLFN-g3_helicase
nSTAND3
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
102450375
NCBI-ProteinID:
XP_025034095
LinkDB
All DBs
Position
Unknown
AA seq
2830 aa
AA seq
DB search
MSTCRWCTPGGSSTTQFLRTYASKTLSPEDCAAANDDLCYCLECVVEYHKARDELPCLLQ
ELLWELETSRLVDHFEKSMKTAIGEDDELFIVDDDGETKLYGYTGPDFENNLRVPLLEIL
KYPYLLLHERISELCVEALCKMEQVNFSFQVFDKHPGIYLLLVHPNEVIRRWAILTARNL
GKVDRDDYYDLQEVLTCLFKVIELGLFDSPDIYSSSMIEKGKLILLPSHLYDTTNYKNYW
LGICMLLTVLEEQTMDSLLLGPDKQNDFMQSILHTMEKQTDDESTDPFWPALHCFMVILD
QLGSKVWGQLIDPVQAFQTIINNVSYNNEIKNIRNSSRRTKSEPESNYEEDMFTCSQIVY
NYNTEKPKKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGQDMRVHNSTFLWFIPFVQS
LMDLKDLGVAYIVEVIHHLCSEIKGFLSESVQQCDKVSEFFILILVSVVELHRNKKCLHL
LWVSSQEWVEAVVKCAKLPAIAFTRSFEKAPGNCSRVSAAISSQAFNSVQHACVQLIRSL
LREGYQLGQQTVCKQFLDKLNLLLRGNLSLGWQLSIRETQDLQICLKHVIKNIKDRSSNA
SIPVENSVVGTNLLMGPVKQEKGTVNARCQMNSLSPPFSSASGRDEVCQDSPSPGGRDIS
FNNTKLGVTADCLLTNIKKEACVRPFQECEHPDSSEATKIHKDTHTNGNNPQLQGNQNKN
SSLLKQCFNTSPQVSDFKSCAILERDETELRMSECLSTQACFSSVEDIYNSNGKDGSRSP
NSCSKFKTDDDKITNLKTKARKADWTTKLLQLMKQSASNSEVDQLQPQSENLYTRNDGNR
NQEMNILSEGETSVNFNTSNSSENKQEKSMNSTQIKLLSLKQESNDTMVDYSNSFKKEFG
LEESESGGEDDNIPLATIRRSLKKRKSLSGKSSALPKPLLNKDLNTEILGQGQSSSLCPN
RENHNDQNVSIPHTGEISAHFNIPPNSENKGEIPRNASLISPLLIKHESTDRLLDFSRYF
KKESDSEEKRNSEDNTAIAYHLIQKCGASPITDGQIDGSLNKLSLAAYAKDVNFPVDLSQ
ESSIRQCDIKRKVKGAVRSSTKGQSNESSSETDCPNNEVIVISDSSSDEEKKLDNKKPIK
KDEHVQPEKEHLTSGCVADSVNKKEHLKTPSSPLPCEEYNSQYFEFETEDDVFSVWQDSQ
INDEEVNQAQEQDSNLTSASNCASNSFQLTDLTNDWGYDTDYISDDVIEKAAEVVEKQVD
SLSLKNVNKADIKSEATFQEPAIKGNVVDQSENFIPPDAVAEDQAKNTGFMEPRASTSSI
SLTSKLAGKKSTLSPGKSLAKSKLVRIALRSPRRISLKTLQSKKFPQMSSKNTEPCRSTP
AVVPPKKVRQCPEPTLTVVKLGLKKAPRKAFELSQRSLDSLAELXXXXIAPQNLVVKHNR
KMLACQDLQFLRQIRPKQAGGEKNRIGSSEGRSKKMTKKSDPKHSIQQPVAFDPACAART
SEKQKERIAKQLCCPLSNDGKKVRESFSSERGEVQTTHINKMATPDSNESNIIEENNMAV
SVLQTESCLSSSLSGDGKNKPAERECVVPLVSSSTFNFEGTTLKESKPKLNENSDEDDLF
LTQLDPVDMEMCSQMENVEDDVITSEKEPVDMELDTAECPLQNESLSIVKCKYKNCTEHV
EKTGEYCSKHFATDASDHFFVKPNLPPPKSEKPSTTKIFSSKSSSRNASLTKDIENISEH
SKAKSNLVKPTLSKLGNPNPVSSENQIVRVPTSSGSLRPRSSSNVLRPQNMQTNSTSSLP
KRFASGAQSGQERSFPSFPQANALVAQQRDHSIFVTEILKWSYEMFASFSQFGLPHNLLQ
SIMVSVPVKFQGYNDYFNTFFPLLMLNAFETLAQEWIENQKTREKNCYHLHLQNFCADLN
RADFTAYIQESDLAKQLHPKDDDLIFLVVPEKQNTFAEESELNSRLVYHVGFVTRFSRAS
LRETRQNEQHVVCHISVQTRGNLSYYISQQVKCVVISSLVTTQRRFKGLLLLSRSPLAKS
IINPSYTDFCPRDLNVASESTTSYMRDYNADQKKAIETAYAMVKEHPRLPRICLIHGPPG
TGKSKTIVGLLYRILTERSGNANPAQNLNAKIKRNRVLVCAPSNAAVDELMKKIILEFKE
KCQDRNNPLGNCGDINLVRLGPEKSISIDVLRFSLDSQVSHRMNRGQPGRDQDIHRKKEA
LDRQLDMLSRQRAMDRCEKREKSQKLDEEIGKLSKERQLLTSQLKKVRGRPQEVQASIIL
ESHIICCTLSTSGGFLLESAFRRQGLDPFSCVIVDEAGQSCEVETLIPLTHRCSKLVLVG
DPKQLPPTVISLKAQEYGYDQSMMARLHKHLEEQVQENVIGKLPVVQLTVQYRMHPDICL
FPSNYIYGRTLKTDRSTEESRCSSDWLFQPYLVFDVADGHEKRDNDSFANPQEVKLVMEI
IKLIKEKKNDIGFRHIGIITPYSAQKKMIQQELDREFGKNRAGEVDTVDGFQGRQKDCII
VTCVRANSTQGSIGFLASLQRLNVTITRARFSLFILGRLTTLMENKDWNKLIQDAQRRGA
IIKTYDKNYKKDAVKILKLKPTLQRPLSYPPTAALSEKATRVQACSGSNGQNVVTSRKNS
SDSRKLSASAGLSAQSSGVVRQPPESPALGSKGVTIPTPVQPAVRERPRDPRLARRAEAT
GKDQTTKTSNPSALNSPGVTLPRGSDTPSAHWGQISTVQPTVSRVEDSSKPKQTVRQADM
PFTASHTARQDHEWRVSVPSKEARTVSEEQRGKNQWNKDKDYRIPANRRSLEQPPENKDL
GEAKRRKVSY
NT seq
8493 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgttggtgtacgcctggtggttcctccaccactcagttcctaaggact
tatgcttccaagactttgtcccctgaagactgtgcagcagccaacgatgatctctgttac
tgcctggaatgtgtggttgaatatcacaaagcaagggatgaattgccctgcttgttgcag
gagctcttatgggagttggaaacctcccgtctcgttgaccactttgagaaatctatgaag
acagctattggagaggatgatgaattatttatagtggatgacgatggggaaacgaaactg
tatggttacacaggcccagattttgaaaacaacctgcgagtacctcttctagaaatactg
aaatatccatacctgttgctacatgagcgaatcagtgagctctgtgttgaggctctttgt
aaaatggaacaagttaacttctcctttcaggtctttgacaaacatccaggcatttatctg
ctgctggtacaccccaatgaagtgattcgtcgatgggccattctgactgcaagaaactta
ggaaaagtcgacagggatgattactatgacttacaggaagtgttgacttgcttgtttaaa
gtaattgagttggggctgtttgacagtcctgatatttatagttcttcaatgattgagaag
gggaaactcattcttctgccgtcccatttatatgataccaccaactataaaaattactgg
ctaggtatctgtatgttactaacagtgctggaagaacaaactatggattctttgttactg
ggtccagataaacagaatgatttcatgcagtctatacttcacaccatggagaaacaaaca
gatgatgaaagcactgatcccttctggccagccttgcattgtttcatggtgatattggat
cagcttgggtctaaagtgtggggtcaactcatcgatccagtccaggcctttcaaaccatt
atcaacaatgtcagttacaacaacgaaataaaaaatatacgcaatagttcaaggaggact
aaatctgaaccagagtcaaactatgaggaggacatgtttacttgcagtcagattgtgtat
aattacaatacagaaaagcccaaaaaggatactggatggaagacggccatttgtccagat
tattgccccaacatgtatgaagatatgcagacgttagctaatgtgctccagtctgatatt
ggccaagatatgcgtgtccataacagcacatttctatggtttatcccttttgttcagtcc
ctaatggacctcaaggacttgggcgtggcttatatagtagaagtcatccaccatctgtgc
tcagaaatcaaaggctttctcagcgaaagtgtccagcagtgtgacaaagtttctgaattt
ttcatcctgatcttggtgtcagttgttgagctacacagaaataaaaagtgcctgcatttg
ctgtgggttagttctcaggaatgggtggaagcagtagtgaaatgtgctaaacttccagcc
attgcatttactcgcagctttgaaaaagcacctggaaactgttccagagtttcagcagca
atatcttcacaggcttttaactcggtacagcatgcttgtgtgcagttgatacgtagcctt
cttcgagaaggctaccagttaggacaacaaactgtttgcaagcagtttctagataaactc
aatctgcttttgcgtggaaacttatctctgggttggcaactgagcatccgggaaacccaa
gacttgcagatatgtttaaagcacgtaataaaaaatataaaggacagatcatccaatgct
tccatacctgtggaaaacagtgtggtaggtacaaatttgctcatgggtcctgtaaagcaa
gagaaaggaacagtcaatgccagatgtcagatgaatagcctcagtccaccattttcttca
gcatctggcagagatgaggtttgtcaagatagtccttcgcctggaggaagagatatatct
tttaacaatacaaaattaggtgtaaccgcagattgccttttgacaaatattaaaaaagaa
gcttgtgttcgtccatttcaagaatgtgaacatcctgatagttcagaagcaacaaaaata
cacaaggatacccatacaaatggaaacaatccccaactgcaggggaaccaaaataagaat
agctccttacttaaacagtgcttcaatacaagtcctcaagtctctgatttcaaaagttgt
gctatattggagagagacgaaacagaactgaggatgtcagagtgtctgagtacccaggct
tgtttcagttctgttgaagacatttacaactcaaatggaaaagatggaagtagatcccct
aattcctgctcaaagtttaagacagatgatgataaaataacaaatttgaagaccaaggca
cggaaagctgattggaccacaaaactacttcaattaatgaagcagtcagcttcaaattca
gaagtagaccaactacagcctcaatctgagaatctatatacgcgtaatgatggcaacaga
aatcaggaaatgaatattttgagtgaaggtgaaacctcagttaactttaatacttcaaat
agttctgaaaataaacaagagaaaagcatgaacagtactcaaatcaagctgctctctctt
aagcaggaatcaaatgacaccatggtagattattcaaattcctttaaaaaagaatttggt
ttggaagaaagcgaaagtggtggtgaagacgataatatcccccttgctacgattagacgt
tctttaaagaaaaggaaatccctttcaggaaaatcaagtgctttaccaaagcctctactg
aataaagaccttaacacagagatactgggtcaagggcagtctagcagtttatgcccaaac
agagagaaccacaatgatcagaatgtgagcataccacacacaggtgaaatatcagcacat
tttaacattccacctaattctgaaaataaaggggagatacccaggaatgcttctctaatc
agtccactcttgattaagcatgaatcaactgacagactgttagatttttcaagatatttt
aaaaaagaaagtgattcagaagaaaaaagaaatagtgaagataatacagcaattgcatat
catttgatacaaaaatgtggagctagccccataacagatggtcagattgatggaagtctc
aataaattatcactagctgcttatgccaaagacgtcaattttcctgttgatttaagccaa
gaatcctcaatacgtcagtgtgatattaaaaggaaagtaaaaggtgctgttagatcatcc
acaaagggtcaaagtaatgagtcctcttctgaaacagattgtcccaacaatgaagtcatt
gtcatttcagattcctcttctgacgaggaaaaaaagttggataataagaaaccaataaaa
aaagatgaacatgtgcaaccagaaaaagaacatttaacatctggttgtgttgctgatagt
gtgaacaaaaaagagcatttgaagactcctagttccccgttgccatgtgaggaatataat
tctcagtattttgagtttgaaactgaagatgatgtcttttcagtttggcaagattctcag
ataaatgatgaggaagtgaatcaggcacaggaacaagactctaacttgacttcagcaagt
aactgtgcttcaaatagttttcagttgacagatcttacaaatgactggggttatgataca
gattacatcagtgatgatgtaattgaaaaagcagcggaggttgttgaaaagcaggtagat
tctctgtctcttaaaaatgttaataaagctgacataaaatctgaggcaacttttcaagag
cctgctattaaaggaaatgtagttgatcagtctgagaattttattccgccagatgctgtt
gctgaagaccaagccaaaaacacaggcttcatggaacccagagcatctacatccagcata
tctttaacttcaaagttggctggtaaaaaaagcactttaagtcctggcaaaagcttagca
aaatccaagttggtaagaattgcccttagaagtcccagaagaataagccttaaaactcta
caaagcaaaaaatttcctcagatgagttctaaaaatactgagccttgcaggtcaacccct
gctgtagtacctccaaagaaagttcgccagtgtcctgaaccaactttaactgtggtaaaa
cttggtctaaaaaaggcccctcgcaaagcatttgagttatcccaacgatccttagatagt
ttggctgagttgncnnnnnnnnnnatcgctccacaaaatctagttgtaaaacataataga
aaaatgttagcctgccaagatcttcaatttttaaggcagataagacccaaacaagcgggg
ggagagaaaaatcggataggaagttctgagggcagaagcaaaaaaatgactaaaaagtct
gatccaaagcattctatacaacagcctgtggcttttgatccagcatgtgctgccagaacc
agtgaaaaacaaaaagagaggatagccaagcagttatgctgtccattaagcaatgatgga
aaaaaagtgagagagagcttttcatctgagagaggggaagtccaaactacacacattaat
aaaatggctacacctgattctaatgaatctaacataattgaagaaaacaatatggcagtt
tctgtgttacagactgaatcatgtttgtcttcatctttaagtggagatggcaaaaataaa
cctgcagagagagaatgtgttgttcccctagtttcctcatctacatttaactttgagggg
acaactttgaaagagagcaagcctaaattaaatgaaaacagcgatgaagatgatttattt
ttaactcagttagatcctgtggatatggaaatgtgttctcagatggaaaatgttgaagat
gatgtaataactagtgaaaaagagccagtagacatggaattagatactgctgaatgtcca
ctgcagaatgaatccttaagtattgtaaagtgtaagtacaaaaattgtacagaacacgtg
gaaaagacaggggagtactgtagtaagcattttgctactgatgcttcagatcatttcttt
gtcaagccaaatttgccacctcctaagtctgaaaaaccttctactactaaaattttcagc
tcaaaaagctcttcacggaatgccagcctcaccaaggacattgaaaatatttcagagcac
tcaaaagctaagtcaaatttggtaaaacccactttgtccaagctagggaatccaaaccct
gtatcatcagagaaccagatagtcagggtcccaacttccagtggtagtcttcggccccgg
agttccagcaatgttcttcggccccagaacatgcaaacaaacagtacttcaagtcttccc
aagaggtttgcctcaggggctcagtcagggcaagaaagaagttttccttcctttccacaa
gcaaatgctcttgttgctcagcagcgtgatcatagtatttttgttacagagatcctgaaa
tggagctatgaaatgtttgctagtttcagccagtttggacttccacataaccttcttcaa
tcaattatggtctctgttcctgtcaaatttcagggatacaatgactattttaatacgttt
ttccctttgctgatgttaaatgcctttgaaacgcttgcacaggaatggattgaaaaccag
aaaacaagagagaaaaactgttaccatttgcacttacaaaacttttgtgctgatttgaat
cgagcagattttacagcatacattcaggaaagtgatctggcaaaacagcttcatccaaaa
gatgacgacttgatctttttggtggtgcctgaaaaacaaaacacctttgcagaagaaagc
gagctgaatagccgtcttgtatatcatgtaggttttgtgacccgcttctcccgtgcatca
ctccgtgaaacgaggcaaaatgagcagcatgttgtctgtcacatttctgtccaaactcga
ggcaatttgtcatactatataagccagcaagtgaaatgtgtagtgataagctctctagtg
accacgcaacgaaggttcaaaggtctgctactgttgagcaggagtcctctggctaaatct
atcataaatccaagttataccgacttctgtcctcgagatttgaatgtagcttccgagagc
acaacttcctatatgagggactacaatgcagatcagaagaaggctattgaaactgcatat
gctatggtaaaggagcatccacggcttcccagaatctgcctgatccatgggccacctggg
acagggaaatcaaaaacaattgttggactcctgtaccgtattctgacagagaggtctggg
aatgcgaatccagctcaaaacttgaatgccaagatcaagcgaaaccgagttctggtttgt
gcaccttccaacgctgctgttgatgaactcatgaaaaagataattctggagttcaaagaa
aaatgccaagacagaaacaatcctttaggaaattgtggagatataaacttagtgcgactg
ggtccagaaaagtcaataagcattgatgtcctgagattcagcctggacagccaagttagc
catagaatgaaccggggacaaccaggtcgtgaccaggatattcacaggaaaaaggaagcc
ctggatcgccagctggacatgctctctcgccagcgtgccatggatagatgtgagaagagg
gagaagagtcaaaagttagatgaggagattggcaaactttcaaaggagcggcaactactt
acttctcaactaaagaaggtccgggggcgccctcaggaagtgcaggctagcatcatcttg
gagtcccacatcatctgctgcacattgagcacaagtggaggctttctgctggagtctgct
tttcgccggcaaggacttgaccctttcagctgtgtcattgtggatgaggcggggcagtcg
tgtgaggttgaaactctaattccactgactcatcgctgtagtaaacttgtccttgttggg
gatcctaagcagctccctcctactgtaatatctctgaaagctcaagagtatggctatgat
cagtctatgatggctcgactgcataaacacctggaggaacaagtgcaggagaatgttata
gggaagctgccagttgtgcagcttactgtacaatataggatgcatcctgacatctgtctg
ttcccatccaattacatttatggcaggactttaaagactgacagatcaacagaagagagc
agatgttcttcagattggctattccagccatacctagtgtttgatgtagcagatggccac
gagaagcgggataatgactcttttgctaatccccaggaagtgaagctggtgatggaaata
ataaaattaattaaagaaaaaaagaatgatattggttttcgtcacataggaataatcacc
ccttacagtgcacagaaaaagatgattcaacaagaactggacagagagtttggaaagaac
agagcgggggaagtagacacagttgacggattccagggtcgacagaaagactgcattata
gtgacgtgtgtaagagcgaacagcacacaaggatcaattgggtttttggcaagtcttcag
cgtctgaatgttacaattactcgggccaggttcagtctcttcatccttggaagactgaca
acgctaatggaaaataaagactggaacaagctgattcaggatgctcagcgaagaggagct
attatcaagacttatgacaaaaactataaaaaagatgctgttaaaattctcaagctcaag
cctacgctacagcggccactctcctatcctcctactgctgcactgtcagagaaagcgact
cgagtgcaggcttgttcgggtagtaatggacaaaatgtggtcaccagcagaaaaaacagc
agtgactccagaaaactctctgccagcgctggcctgtcagcacaaagtagtggagtagtc
agacagccaccagagtctccagctttgggttccaaaggagtcaccattcccacgccagtg
cagcctgctgttcgagagagaccccgggatccaaggctggctaggagggcagaagcgaca
gggaaggatcagaccaccaaaaccagcaatccatcagctttgaacagtccaggtgtgaca
ttaccacggggctctgataccccttcagcccactggggtcagatcagcactgtgcagcct
actgtctccagggtggaagattccagcaaacccaaacaaactgtaagacaggcggacatg
cctttcactgcttcccacacagccaggcaggaccatgagtggagagtttctgtcccctca
aaggaggcaagaactgtcagtgaagaacagagaggtaagaatcagtggaacaaagacaag
gactatcggatccctgcaaacaggagatcattagaacaacccccagagaataaagacttg
ggtgaggccaagaggaggaaggtctcctattag
DBGET
integrated database retrieval system
