Pelodiscus sinensis (Chinese soft-shelled turtle): 102451562
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Entry
102451562 CDS
T02980
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss04120
Ubiquitin mediated proteolysis
pss04137
Mitophagy - animal
pss04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
102451562 (PRKN)
04120 Ubiquitin mediated proteolysis
102451562 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
102451562 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pss04131
]
102451562 (PRKN)
04121 Ubiquitin system [BR:
pss04121
]
102451562 (PRKN)
03029 Mitochondrial biogenesis [BR:
pss03029
]
102451562 (PRKN)
Enzymes [BR:
pss01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
102451562 (PRKN)
Membrane trafficking [BR:
pss04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
102451562 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
102451562 (PRKN)
Xenophagy
Other xenophagy associated proteins
102451562 (PRKN)
Ubiquitin system [BR:
pss04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
102451562 (PRKN)
Mitochondrial biogenesis [BR:
pss03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
102451562 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
IBR_1
IBR
Rcat_RNF216
Motif
Other DBs
NCBI-GeneID:
102451562
NCBI-ProteinID:
XP_025036460
LinkDB
All DBs
Position
Unknown
AA seq
430 aa
AA seq
DB search
MNRKNCDLAQQSIVHIVQSPRESIQKRAGVESANATGILGDVEKEPESLTRIDLSTSVLP
SYSAGLAIILDTTDNTISLPVVKSGAAIYNSFYVFCKSFCQAVKPGKLRVRCSTCKEGTL
TLTRLSSPFASFCCSIWAYIRVHGPSCWEDVLIPNRITGTCQSQNCSGDVAEFYFKCGAH
PTSDSETSVALNLITTNSRHITCITCTDIRSPVLVFQCLHRHVICLDCFHLYCVTMLNDR
KFIHDPVLGYSLPCVAGCPDSLIKELHHFRILGEEQYNRYQRYGAEECVLQMGGVLCSAP
GCGAGLLPEPEMRKIVCEPSNGLGCGFVFCRECREEYHDGDCSTLHSTPEAIAQKGYMVD
EYAAMKARWEEASRETIKKTTKPCPSCHVPVEKNGGCMHMKCPQAQCRFEWCWNCGLEWN
RTCMGDHWFD
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaaagaactgtgacctggcccagcagagtatagttcatattgttcagagtcca
cgagaaagtattcagaaaagggctggtgttgaaagtgccaatgccactggtattttagga
gatgtggaaaaagagcctgaaagtctaacacgtatagacctcagtaccagtgtcctccca
tcttattctgcaggactggctattattctggatactacagacaacaccatttcccttcca
gttgtcaaatcaggtgcagctatttacaatagtttttatgttttctgcaaaagtttctgt
caagctgtgaagcctgggaaactgcgggtccgttgcagtacatgtaaagaagggacacta
actctaacaaggctttcaagtccatttgcatccttttgctgctccatctgggcttacata
agagtacatggtccatcttgctgggaggatgtgctgattcccaacagaataactggcact
tgccaatcccaaaactgcagtggagatgtagcggagttttattttaaatgtggagcacac
ccaacttctgacagtgaaacatctgtggctctgaacctcattacaacaaacagccggcat
atcacatgtataacatgcacagatattagaagccctgtgctggtgttccagtgcttgcac
cgccatgtcatttgcctagactgcttccatttatactgtgtgactatgctgaatgatcgc
aagttcatccatgaccctgtgcttggctactctctcccatgtgttgctggatgtccagat
tccttgattaaagagcttcatcacttccgaattctaggagaagaacagtacaaccgctac
cagcgctatggtgcagaagaatgtgtgctgcagatgggtggagtgctgtgttcagctcca
ggttgtggagctggccttcttcctgaaccagaaatgaggaaaatagtatgtgagccaagc
aatggactgggctgtgggtttgtgttctgccgtgaatgtagagaagaatatcatgatggg
gattgcagcaccctccatagtactccggaagccatagcccagaagggatatatggttgat
gagtatgcagccatgaaagcaagatgggaagaggcatccagagaaacaatcaagaaaaca
accaaaccgtgtcctagttgccatgtaccagtagaaaaaaatggtggatgcatgcacatg
aaatgtcctcaagctcaatgcagatttgagtggtgctggaactgtggtttagagtggaac
aggacctgcatgggagaccactggtttgactaa
DBGET
integrated database retrieval system
