Pelodiscus sinensis (Chinese soft-shelled turtle): 102454654
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Entry
102454654 CDS
T02980
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pss03009
]
102454654 (IGHMBP2)
03012 Translation factors [BR:
pss03012
]
102454654 (IGHMBP2)
Enzymes [BR:
pss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102454654 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
102454654 (IGHMBP2)
Ribosome biogenesis [BR:
pss03009
]
Eukaryotic type
Other ribosome biogenesis factors
102454654 (IGHMBP2)
Translation factors [BR:
pss03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102454654 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
ResIII
Viral_helicase1
AAA_16
DEAD
UvrD-helicase
nSTAND3
AAA_22
IstB_IS21
Flavi_DEAD
SLFN-g3_helicase
VWA_2
AAA_25
Zot
AAA_33
AAA
DnaB_C
ATPase
PhoH
RL
NTPase_1
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
102454654
NCBI-ProteinID:
XP_006131730
Ensembl:
ENSPSIG00000015808
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MVLQVLVDRKGHLTNINIECWESIISLQTSVVPLCVFSRAWRESIFLKELQRKGVCLLKL
QVASQRTGLYGRLLVTFQPRKYNPDAELPCNSFGPGDIVGLYESAGQGDPLSTGIVTHIT
PKLVTVAFEESRDGLLSLDQENSYRLLKLANDVTYKRLKKALNTLNQYLSGPACSLIDVL
FFSSEPSAPSETKPLTFYNEALDASQREAVCFSLAQKELAIVHGPPGTGKTTTVVEIILQ
AVRQGLKVLCCAPSNIAVDNLVERLAGYKQKILRLGHPARLLESIQHHSLDAVLARGDNA
RIVADIRKDIDQAFTKTRKTQDKGEKSHFRNEIKALRKELKEREETAMIEILSQANVVLA
TNTGASSDGPLKLLPENHFDLVVIDECAQALEASCWIPLLRARKCILAGDHKQLPPTIIS
DKAAAQGLSLSLMERLIQKYGESIVKMLTVQYRMHQAIMQWSSTEMYCGQLTAHPSVARH
LLKDLPGVASTEETRIPLLLIDTAGCGLFELEVEEEQSKGNQGEVRLVGLHIQALVEAGV
KARDIAVIAPYNLQVDMLREHLCHKYPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGF
LAEDRRINVAVTRARRHVAVICDSRTVGSQAFLKRLVDYLSEHGEVRTAFEYLNDIVPDN
YSHESSQSQGEQGPKTNTASAPKPKAENQKSKPNPMKPPTQRPAALPLQSKNESRVEGPE
MKDNSGSFRVMIVEFLKSSKMQMDFPSSLNSHDRMLVHQLAEDYGLQHVSTGERRERYIS
ISKKTTTISSSPVHTDDSEQSPPSESQSPGKEALVPDKKRESSMSSQKVDLKTLHLERLQ
RETAKKEERARKNQELSINLQEIAGRKHKNETKGKATVKIAADTPAGEDIDALISAAVKV
DNTCGFPRCKASVTTMGQLCLHCNKRYCLSHHIPEIHGCGEKAKAQARQRISREGILYAG
SGSKDKSLDPAKRAHLQRRLDKKLNELTSQRKSKKKDKEK
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggtgttgcaggtgctggtggatcgcaagggccatttaaccaacatcaacatagaatgt
tgggaaagtattatctccttgcaaacatctgtagtgcctctgtgtgtgttttccagggcc
tggagagaaagcatcttcctgaaagaactccagcgcaaaggtgtctgcttgctcaaactg
caggtagccagtcaaagaactgggctctatggacgactgcttgtaacatttcagcctaga
aaatacaatccagatgcagagctgccctgtaacagctttgggcctggtgacattgtgggt
ctttatgaatctgctggtcagggcgatccactttccacaggaattgtgacccacataacc
cccaaattggttaccgttgcctttgaggagtctcgagatggcctgttgagcttggaccaa
gagaattcttaccgcctgctgaagctagccaatgatgttacctacaagaggctgaaaaaa
gctttaaacacactaaatcagtatctctctggtccagcatgcagtcttattgacgtcctt
ttcttttcttctgaaccaagtgctcccagtgaaacaaagcctttaacgttctacaatgaa
gcgctggatgcctctcagagggaggctgtttgcttttcgctggcacagaaagaacttgct
atcgtccatggacctcctggcaccggtaaaaccactactgtggtcgagataatacttcaa
gctgtgcggcaaggcctgaaagtcctgtgttgtgctccctccaacattgcagtggataat
ctggtggaaagactggctggctataagcagaagatactgcgtcttggtcaccctgctcgc
ctgctggaatccatccagcatcattccctggatgcggtcttggcacgtggcgataatgcc
cggatagtggcagatatcaggaaggatattgaccaggcattcacaaaaaccagaaagact
caggacaagggggagaaaagccatttccgaaatgagattaaagcactgagaaaggagctg
aaggagcgagaagaaactgctatgattgaaatcctctctcaggctaatgttgttcttgca
acaaatacaggtgcttcctctgatggtccactgaagttacttcctgaaaatcactttgat
ctggtggtgatagatgaatgtgctcaggcattagaagcgagctgttggatacctttgctg
agggccaggaagtgtatcctggccggggatcacaaacagttgcctcccacaatcatatct
gacaaggctgcagcacagggtctttctctcagcctaatggagcgtctgattcagaaatat
ggcgagagcatagtgaagatgctgactgtgcaataccgaatgcatcaggctataatgcag
tggtcctccacagaaatgtactgtggccaactcacagctcacccttccgtggcacgtcat
ttgctgaaggaccttccgggagttgcttctacagaagagactaggattcctttgctgctt
atagatacagctggctgtggcttatttgagcttgaagtggaagaagaacagtctaaaggg
aatcaaggggaagtgcgtcttgtaggcttgcacatccaggctttggtggaagctggcgtt
aaagcaagagacattgctgtcattgctccttacaacctccaggtggacatgctaagagag
catctttgtcataagtatccagagctggaaattaaatctgtagatggcttccagggacgg
gaaaaggaggctgtcgtgctgtcctttgtgagatccaataggaaaggcgaggtgggtttt
cttgctgaagaccggaggataaacgtggcagtgactcgtgcccgacgccacgtggcagtc
atctgtgactcgcggaccgtcggcagccaggcctttttgaaacggctggtggactatctg
agtgaacatggggaagtgcggacagccttcgagtacctcaacgacattgtgccagacaac
tactctcatgagagctctcaaagtcagggggagcaagggcctaaaaccaacacggcctct
gctccaaaaccaaaagctgaaaaccagaaatccaaaccaaatccaatgaaaccacccaca
cagagaccagcagcactacccttgcagagtaaaaacgagtctagggtggaagggccagag
atgaaagacaattcaggcagtttcagggtcatgatagtggagtttctgaagagcagcaag
atgcagatggatttcccttcatccttaaactcacacgacaggatgctggtgcaccaactg
gctgaagattacgggttacagcatgtaagtactggggagaggagagagaggtacatcagc
atcagtaagaaaaccaccaccatcagttcctctccagtgcacacagatgacagtgagcaa
agcccaccttctgaatcccaaagccccggaaaagaggcacttgtgccagacaagaagaga
gaaagcagcatgagctctcagaaagtggatctgaaaacgctgcacctggagagattgcaa
cgggaaaccgccaaaaaagaagagagggcccgaaagaatcaggagctgagcatcaatttg
caggaaatagctggaagaaaacacaaaaatgaaacaaaaggaaaggccacggttaaaatt
gcagcagacaccccagctggagaagatattgacgccctgatttctgctgcagtgaaagtg
gacaacacgtgtggtttccccaggtgcaaagctagcgttacgaccatgggacagctttgt
ctgcactgcaacaagcgctactgcctcagccaccacatcccagagattcatggatgtggg
gagaaggccaaagctcaagctcggcagagaattagcagagaaggaattctctacgctggg
agtggatcaaaagacaagtcattggacccagcaaaaagagctcacttgcagaggcgccta
gataaaaaacttaatgaactgaccagccagagaaagagcaaaaagaaagacaaagagaaa
tga
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