Pelodiscus sinensis (Chinese soft-shelled turtle): 102454877
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Entry
102454877 CDS
T02980
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102454877 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pss03019
]
102454877 (XAB2)
03041 Spliceosome [BR:
pss03041
]
102454877 (XAB2)
Messenger RNA biogenesis [BR:
pss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102454877 (XAB2)
Spliceosome [BR:
pss03041
]
Complex B
Other components
Prp19-related factors
102454877 (XAB2)
Complex C
102454877 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
RPN7
TPR_16
ATG1-like_MIT2
LTN1_E3_ligase_6th
NRDE-2
Motif
Other DBs
NCBI-GeneID:
102454877
NCBI-ProteinID:
XP_006120012
LinkDB
All DBs
Position
Unknown
AA seq
925 aa
AA seq
DB search
MAPGRKWAVQVAFHRKCGLLRFSSRAGRWLYDAKRARRLRHRRASGPVVVGVRGAASGVG
AMPELEEAPVAGGAGKPDLFFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPRQVLNLI
YERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPGYEEVNNCHERALVFMHKMPRIWLDY
CQFLMDQCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLS
PENAEEYIEYLRSIDRLDEAALRLAVIVNDERFVSKEGKSNYQLWHELCDLISQNPDKVK
SLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVF
DSYAQFEESMIAAKMETTSELGQEEEDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHN
VHEWHKRVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVSFARFYEDNGQIEDART
IFEKATKVNFKQVDDLAGVWCEYGEMELRHENYDQALRILRVSPGAATWVQGRHQAAPPS
AAGESWGGRRDKHLEVKAQTRGFHSQLGEEQRGLSTKAVYDRILDLRIATPQIIINYALF
LEEHTYFEESFKVGGTGXQSPSLAXXXXXXXXXXXXXXGGRRERPRDLFEQALDGCPQKY
AKTIYLLYAKLEEEFGLARHAMAVYERATRAVQPSEQYEMYNIYIKRAAEIYGVTHTRSI
YEKAIEVLSDEHAREMCQRFADMECKLGEIDRARAIYSYCSQICDPRTTGSFWQTWKDFE
IRHGNEDTIREMLRIKRSVQATYNTQVNFMASQMLKVSSNATGTVSDLAPGQSGMDDMKL
LEQRAEQLAAEAERDKPRAKEKILFVRSDVSRSELAALSRQANPDEIDIDEEEEEGTGSE
ENEPDEVQLEQQSVPSAVFGGLKAD
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccggacggaagtgggccgtgcaggtggcgtttcaccggaagtgcggccttctt
aggttttcctcccgcgcgggccgctggctctatgacgcaaagagagcgcgtcgcttgcgt
catcgccgcgcgtcggggcctgtcgttgtcggtgtgcggggagcagcgtcgggcgttggc
gcgatgccggagctggaggaggcgccggtggctggcggcgcggggaagccggacctcttc
ttcgaggaagaggatctgcagtacgaggaagaaatcctgcgcaaccctttctctgtcaag
tgctggatccgctacattgagttcaaacagaatgccccccggcaggtgctgaacctcatc
tacgagagagccctcaaggagctgccaggcagttacaagctatggtacaactacctcaag
cagcgccggaagcaggtgaagaacaggtgtgtgactgaccccggctatgaggaggtgaac
aactgccacgaacgtgccctcgtcttcatgcacaagatgccccggatctggctggattac
tgccagttcctcatggatcagtgccggatcacccgcacacgcaggacctttgaccgagca
ctccgggcgctgcccatcacgcagcaccatcgcatctggcccctctacctgaagttcgtg
cgcttgtaccccctgcctgagacggccgtgcgagtctaccgcaggtacctcaagctgagc
cccgagaacgcagaggaatacatagaatacctgcgctccatcgaccggctggacgaggcc
gctctccgccttgctgtcatcgtcaatgacgagaggtttgtctccaaggaggggaaatcc
aactaccagctgtggcacgagctgtgtgacctcatctcccaaaatcccgacaaggtgaag
tccctcaatgttggggccatcatccgcggaggcctcactcgcttcactgaccagctgggc
aagctctggtgttccctggctgactactacatccgcagtgggcactttgagaaggcccgg
gatgtgtacgaggaggccatccagacggtgatgacggtgcgggacttcacccaggtgttc
gacagctacgcccagttcgaggagagcatgatcgcagccaagatggagaccacctcggag
ctggggcaggaggaggaggatgacgtggacctggaactgcgcctggctcgctttgagcag
ctgatcgcacgccgccccctgctgctcaacagcgtgctgctgcgccagaacccccacaat
gttcacgagtggcacaagcgtgtgaagctctatgagggcaagccccgagagatcatcaac
acctacactgaggccgtgcagactgtggaccccttcaaggccaccggcaagacgcacacg
ctctgggtctccttcgccaggttctacgaggacaacgggcagatcgaggacgccaggacc
atctttgagaaggccaccaaggtgaacttcaagcaggtggatgacctggccggcgtgtgg
tgcgagtacggggagatggagctgcgccatgagaactacgaccaggccctgcgcatcctc
cgggtgagccctggggcggcaacgtgggtgcaagggcgacaccaggcagcccccccttcg
gcagctggagagtcctggggggggaggagagacaaacatctcgaagttaaggcccagacc
cgtgggttccactcccagctcggggaggagcagaggggcctgtccaccaaggccgtgtac
gaccgcatcctggacctgcgcatcgccacgccgcagatcatcatcaactacgccctgttc
ctggaggaacacacctacttcgaggagagcttcaaggtggggggcactggctgacagagc
ccctcattggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcggg
aggcgggagcgcccccgcgacctcttcgagcaggcgctggacggctgcccccagaaatac
gccaagaccatctacctgttgtacgccaagctggaggaggagttcgggctggcgcgccac
gccatggcggtgtacgagcgggccacgcgggccgtgcagccctccgagcaatacgagatg
tacaacatctacatcaagcgggcggctgagatctacggagtcacccacacccgcagcatc
tatgagaaggccattgaggtgctgtcggacgaacatgcccgggagatgtgccagcgcttt
gccgacatggagtgcaagttgggcgagattgaccgggcccgggccatctactcctactgc
tcgcaaatctgcgacccccggaccacaggctccttctggcagacgtggaaggactttgag
atccggcatgggaacgaggacacgatccgggagatgctgcgcatcaaacgcagtgtccag
gccacttacaacacccaggtcaacttcatggcctcgcagatgctcaaggtctctagcaac
gctacaggcactgtgtcagacctggcgccggggcagagtggcatggatgacatgaagctg
ctggagcagcgggcggagcagctggcagctgaggcagagcgggacaagccccgggccaag
gagaagatcctctttgtcaggagcgacgtgtcccgcagcgagctggccgcgctctccagg
caggcaaaccctgacgagatcgacattgacgaggaggaggaggaggggactgggagcgag
gagaatgaacccgatgaggtgcagctggagcagcagagcgtcccctcggctgtcttcggg
gggctgaaggccgactga
DBGET
integrated database retrieval system
