Pelodiscus sinensis (Chinese soft-shelled turtle): 102455715
Help
Entry
102455715 CDS
T02980
Symbol
COL4A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss04382
Cornified envelope formation
pss04510
Focal adhesion
pss04512
ECM-receptor interaction
pss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102455715 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102455715 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102455715 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102455715 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pss04147
]
102455715 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
pss00536
]
102455715 (COL4A1)
Exosome [BR:
pss04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102455715 (COL4A1)
Glycosaminoglycan binding proteins [BR:
pss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102455715 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102455715
NCBI-ProteinID:
XP_014427315
Ensembl:
ENSPSIG00000006465
LinkDB
All DBs
Position
Unknown
AA seq
1643 aa
AA seq
DB search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NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaacaaaggttatttgagtgaaggatcaaagcaacgccgggcttgttctggc
tgtggaaaatgtgactgcagtggagtaaaagggcaaaaaggtgaaagaggtttgcctggg
ctacaaggtgtggttggatttcctggaatgcaaggacctgaaggtcctcctggggcacca
ggaattaagggtgatactggagaaccaggactaccaggaacaaaaggaacaaggggccca
cccggtgcatcgggatttccaggaaacccaggtcttccgggcatccctggacaagatggc
ccaccaggtccacctggtatcccaggatgcaatggcacaaagggtgaaataggtcctgtt
ggtcctccaggttttcctggattggttgggatcataggacctccaggacctcctggtatt
aagggagacccgggtgaagtaattgggcaagtaccatgggatgtgctaaaaggtgaaaaa
ggttttcctggccagtctggactaccaggtacacctggattgccagggctccaaggccca
atagggccaccaggtccctcaggagttgaaggtcccccagggcctccaggagatcggggt
gagaagggttatatgggcttgagttttcaaggacaaaaaggtgataagggtgaccaagga
cctatgggccctccaggaccaccaggacctactgaggcattcgaagggaaagggatcaca
gtacatcatatgtatggaccgaaaggtgaaaaaggtgaaaaaggtgatactgggctttca
ggagataaaggtgcagaaatcaaaggggaaaaaggtgaaactgggaaacctggatcacga
ggaaaacctggaaaagatggcgagcagggaccaaaaggagaacctggcaaggatggtgag
tttggatatccaggacgacctggtgaacctggtcctaagggagataagggtgtacaaggt
cttccgggacttccaggaagagtaataggtactggaacagtggatacttatggtgaaaaa
ggagacatgggtcttacaggtcctccaggaatcaaaggtgaacaaggtcaaaaaggcttg
ccaggtatagaaggattaccaggtcctccaggtttacctagcccagggacaagaggtcct
ccaggattccctggtgagaaaggtgaaaagggtgaccatggacttccagggctctctctg
cctggaccagctggaagagatggtttaccagggtctcagggttatccagggcctccggga
ccaccaggcataacaaatggaatcctggaatgtcagcctggagaacctggtgatcgaggt
tttcctggacctcaagggcaacctggattgacaggagagagaggagataaaggtgataaa
ggtgatggttgtgccttgtgtgatggagctgggcttcctggacaaccagggccacaagga
ccaccgggtccaccaggctttccaggacagccaggtgccaaaggagagaggggtgttcct
ggtctcaatggtcctgaaggatttcctggacctccaggtacgcgcggattgattggtagc
ccaggagcaaaaggagagcctggagacatttatattgatactaatctcaaaggtgataaa
ggagatcctgggttcccaggacaaccaggcgttcctggaagagaaggaaggccaggaaga
aatggccagccaggtctccagggcactaaaggggcatcgggtacgattggacttaaagga
gaacgtggtccccctggctcaggtggatttcctggagtacgtggtgaaagaggccagcct
ggccttccagggatagggcctgctgggccagctggcgacaaaggagatagaggctttcca
ggaaacccaggtgtaccaggccttccagggctaaagggagaagcaggacaaatcattcct
ctgcctggtcccccagggtcagatggcctcccagggccacgtggcttccccggaggccaa
ggtgacaggggggatcctgggattccaggaagacctggactttcaggagaaaaaggtgct
actgggcagccaggagtagggttccctgggccaactggcccaaaaggttttccgggtcag
ccgggtgcatcaggtcagcccggggcaaaagggaatcctggctttgatggtttaccaggc
acaccaggtttacctggtcaaaaaggtgaacctggagtaggtctcccaggtcctaaagga
ctgccaggcccacagggtccctctggcatccctggagaaaaaggaaatgctggtttgcct
ggcttacgaggagagcaaggattttcaggtgtacctggtcaaccaggaatccaaggtgac
ccaggttccgctggattaccaggtccacaaggtgccccaggtgtgccaggaataggccct
ccagggcctccggggcctgcaggtggaccagggcctcagggactatcaggatttcctgga
actaagggagagaagggctacccgggtcttcctggactagatatgccaggaccaaaagga
gagaagggtagctctggccagggtgggccaccaggtgtgccaggtttacctggcacacct
ggtttacaaggaaaagaaggatttccaggctctcaaggcatcaaaggagaaatgggagtc
atgggaacccctggaataccaggtgctcctgggccagtaggaaatccaggtgtacggggt
gaaaaaggttcttcaggttttccaggtacgtcaggggcacgaggtgatcctggtttcaaa
ggggataaaggtgaagcaggtctaccaggaaagccaggaaaaatgactgaagtagacatg
aacaatttgaaaggccaaaaaggagaccaaggagaaaaaggacaagaaggacaaacagga
gaaaggggaagtccgggggattaacctgccctacctgccctcccaggacttccaggacga
aaaggtgatcaaggccctccaggatacccaggagacccaggatttccaggaccaaaaggg
acaattggagaaatgggtttgccaggaacacccggagaaaaaggcgtgccaggtgtgcca
ggcttagcaggtcagccgggattccctggattaccaggtgaaaagggagaaaaaggagag
tcaggtattccagggattggcattccaggttctccgggtgagaagggagaacaaggaagg
ccaggtgttccaggcttctctggtgacaaaggggcaaaaggagtccctggcactgcagga
tatccaggcagtccagggagccagggagcaaagggtgaaaaaggactctctggcttggat
ggcattcagggtttaaaaggagaatccggtgaacctggcccacaaggtcctcctggggtc
cctggacataaaggtgaacctggttacgatggaatcccaggttcgcctggaccaaagggt
gatccaggtggtccagggagagggcttccaggatatcctggtgcaaagggagataaaggt
acaaaaggtgatgtaggttttccaggatctccgggaatcccagggattcctggctccaaa
ggagaagcaggatctgttggtccacggggttctccaggccaacaaggctttccaggatta
ccaggcagaccaatggaaggtcctaaaggagatagaggaccccaaggtcaacctggactt
tcaggtgcaccaggtccagtgggatcaccaggacctccaggactagaaggagccaaagga
gaaaaaggaaacacaggttggccaggagcacctggaagaattggaatcaaaggtgatcaa
ggactgcaaggcactcctggtagtgctggttttccaggaggtattggtctaaagggtgat
atgggaccaccaggagttcctgggtttcaaggtccaaaaggggctcctggcttcccaggt
atcaaaggagagcaaggtgaccaaggttttcctggctctaaaggtttacaaggtccccca
ggtctccctggtcattatgaacttcttaaaggggaaccaggtttacctgggcctgtcgga
ccagttggtctcaaagggttccctggagttccaggtcccaaaggacaacaaggagtgaca
ggacccgagggtatacctggacaacctggtattccagggtttgatggcaaacctggtcag
aaaggagaacctggtcctgctggtcccccaggtccacaaggaaccagaggtccaccaggc
ccagagggtttaccagggtcaatgggcccaccaggcacagcatctgtcgctcatggcttc
ctcgttaccagacacagtcaatccattgaagaaccagaatgcccacctggaactaaactg
atgtactatggatactccttactttatgtacaaggcaatgagagagcacatggtcaggat
ttgggcacagcagggagctgtcttcgtaaatttagcactatgccattcttgttctgcaac
atcaataatgtgtgcaactttgcatcgagaaatgactattcctactggctgtctacgcct
gagcccatgccaatgagtatggctcctatcactggtgacaatatcaggccattcatcagt
agatgctctgtgtgtgaggctcctgccatggtaattgctgttcacagccaaactgttcaa
atacctatgtgccctgaaggctggatgtctctttggattggttactcctttgtaatgcat
actagcgctggtgctgagggttctggacaagctctggcatctccaggttcctgtctcgag
gagttccgcagtgctccattcatagaatgccatggtcgtgggacttgtaactattatgca
aatgcttacagcttttggcttgccactatagagagaaatgagatgttcaagaaacctact
ccttcaactctgaaagcaggagacctgcgctcaaacattagccgttgtcaagtctgtatg
agaagaacataa
DBGET
integrated database retrieval system
