Pelodiscus sinensis (Chinese soft-shelled turtle): 102455954
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Entry
102455954 CDS
T02980
Symbol
COL4A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss04382
Cornified envelope formation
pss04510
Focal adhesion
pss04512
ECM-receptor interaction
pss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102455954 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102455954 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102455954 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102455954 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pss04147
]
102455954 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
pss00536
]
102455954 (COL4A2)
Exosome [BR:
pss04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102455954 (COL4A2)
Glycosaminoglycan binding proteins [BR:
pss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102455954 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102455954
NCBI-ProteinID:
XP_014427313
Ensembl:
ENSPSIG00000012359
LinkDB
All DBs
Position
Unknown
AA seq
1713 aa
AA seq
DB search
MGRWRVLVSHCARWRVMQVLLLLGLTSLLTGRVKAGGKSYTGPCGGRDCSGGCQCFPEKG
GRGQPGLLGLQGYSGPPGLMGIPGLQGHKGHKGERGQPGVTGPKGEVGLRGVTGFAGADG
VPGHPGQPGSRGKPGHDGCNGTRGDAGEQGRQGPSGLPGFFGIQGPKGQKGEPFVLPPEI
MRKFRGEPGDPGLFGFPGPQGAPGVVGLIGPTGNPGKPGPKGQQGPRGPPGSKGLDYDGA
KGEKGDLGLQGPPGLRSTGEVTGYPDSVVLEKYKGEKGLKGETGETGKTGLPASSAEKGE
NGIMGYPGERGLPGINGIPGPDGEKGFQGFDGMPGSRGPKGMKGEQGERGIQGPPVYTPY
PIPRKGVRGEPGFRGVPGPAGDPGNQGETWIPVLLRSNGFPEDSEKRGLPGEMGPKGFRG
ESGFPAYQPGPRGSDGKPGLPGLPGPPGPPGIAGYPFGLKGPTGDPGEIGSRGFPGKRGL
KGYKGETSDCKCIESDEARRGPAGLPGPPGFPGPFGQSGKKGDVGDQGQHGLPGFSGTKG
FPGEVGFPGPKGEKGDSRYATTKGIKGDPGSPGIPGIKGEDGFPGKDGIDGLPGLPGLPG
DGIRGSPGDHGYPGPPGDKGIPGEIGVPGAGLPGPKGNRGPPGDTGTYGNPGLQGTPGPR
GAPAQLDCNQVTEDLSRGDGTKTVWPGAQCVRTPKGSPGKPGFPGAVGSKGAKGIPGEPG
LDGFPGLKGFQGDPGREGLPGPPGFTGPRGDGGPPGLPGLQGKPGSSGKPGTPGPAGPKG
IAGEILGAAPGTRGEVGEFGLPGLKGVQGDQGVTGIRGTGGTPGFPGPKGQRGSPGLLGL
PGLPGRPGLHGFPGLPGQQGPSGRIGSPGFVGLAGSRGDPGEQGFPGPVGMKGLAGDKGE
LGNKGAPGAPGVPGLPGIEGMRGFPGLKGTKGSPGVEGFKGMLGLKGKPGLKGLKGEIGS
FGSLGIKGLQGEPGHKGDRGESGPSGKPPDIFQHMYMAKGEKGDIGQAGSKGEIGFKGKN
MLSFYEHPLILHVILVFGSASQIEGKKGDVGLKGVTGVQGYPGTTGPRGISGFPGATGIR
GEKGIEGTRGDVGTYGLPGQTGDRGDTINLPGSKGLKGEAGITGSLGVKGTLGDKGEIGD
PGIIGIEGLKGSQGFPGLKGEQGFPGLVGSPGSQGEPGIPGFQGVKGSHGWPGFAGQEGL
PGFRGISGLDGLPGTKGLPGSPGPDAYGTAGFPGIYGDKGEAGEPSRIEGTRGAPGQKGE
RGNPGERGPVGDPGADGIPGFPGTSNISGIPGDMGSQGLDGVPGYPGPQGRPGPPALPGS
KGEEGQIGVLGEDGQKGSRGDPGLQGRPGISGYPGPKGYKGAQGLMGSLGFVGVSGDRGP
TGPKGDRGQTGIEGPPGSPGLPAVPPKLVTQKGATGPQGKIFPPGXPGDPGFRGPPGKPG
FQGRGGISAPSGFRGDQGPSGFPGLAGIEGEPGHPGNPGLPGMPGRSVNIGYLLVKHSQS
EQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDLCYYA
NRNDKSYWLSTTAPLPMMPVAENEIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPEGWRS
LWIGYSFLMHTGAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTT
INQEFQSFPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgggacgctggcgggtcctcgtctcgcattgtgctcgttggcgggttatgcaggtcctg
ctgctcttggggttgacctcactgttaactggcagagtaaaagctggtggaaaatcttac
acgggaccatgtggaggaagagactgtagtggggggtgtcagtgtttccctgaaaaagga
ggtcgtggtcaaccaggactacttggacttcagggatactctggacccccaggattaatg
ggtatcccaggcttacaaggtcacaaaggtcacaaaggtgaaagagggcaacctggagta
actggaccaaaaggagaagtggggctcagaggagtaactggttttgcaggtgcagatggc
gttcctggtcatcctgggcagccaggatcaaggggaaaaccaggtcacgatggctgcaat
gggaccagaggtgatgccggcgaacagggaagacaggggcccagtggtctacctggtttc
tttggaatccaaggaccaaaaggtcagaagggggaaccttttgtattgcctcctgagata
atgagaaagttcaggggagagcctggtgatccgggattgtttggctttccgggacctcaa
ggtgctccaggtgtcgtgggtttaattggtccaacaggaaatccaggaaaacctggaccc
aaagggcaacagggacctcgaggacctccaggttccaaaggtcttgactatgatggagca
aaaggtgaaaagggtgacttaggtcttcagggtcctcctgggcttcgctctacaggggag
gtgacaggttacccagactcagtcgtattagaaaaatacaagggtgaaaagggattaaaa
ggagaaactggagaaactggaaaaacaggtttacctgcatcttcagcagaaaagggagaa
aatggaataatgggttacccaggagagaggggattacctggtatcaatggcatcccagga
ccagatggagaaaaaggttttcaaggatttgatggcatgccaggtagcaggggtcctaaa
ggaatgaagggagagcagggtgagagaggcattcaaggacctcctgtttatactccatat
cccattccaagaaaaggtgtaagaggagagccaggatttcgaggtgttcctggacctgca
ggagacccagggaaccaaggagagacctggattccagtcctgttaaggtccaatggcttt
cctgaagactctgaaaagagagggttacctggggaaatgggtcccaaaggtttccgtgga
gaatcaggttttccagcatatcagccaggtccacgtggtagtgatggtaaacctggactt
ccaggattacctggcccacctggccctccaggaattgcaggctatccttttggactgaag
ggacctacgggggatccaggtgagataggcagccgaggtttccctggaaaacgaggacta
aaaggatataaaggtgaaacatcagactgcaaatgtattgaaagtgatgaagccagacgg
ggtcctgctggtctacctggtccaccaggttttccaggcccctttggacaatctgggaag
aaaggagatgttggtgaccaaggtcagcatggtcttccaggcttctctggtacaaaagga
ttccccggtgaagttggatttcctgggccaaaaggggagaaaggagattctagatatgct
acaacaaaaggtatcaaaggagatccaggaagtcctggaatacctggcattaaaggtgaa
gatgggtttccaggaaaagatggtatagatggcttaccagggcttcctggccttccaggt
gatggtataagaggttcaccaggtgaccatggttatccaggaccaccaggtgataagggc
attccaggagagattggtgtgccaggtgcagggttacctggcccaaaaggaaaccgtggc
cctccaggtgacactggaacatatggaaatccggggcttcaaggtaccccaggtcctcgg
ggtgctcctgcccaattagattgtaaccaagttactgaagatctttctaggggagatggc
accaaaacagtttggccaggggcacaatgtgtgagaacaccaaaaggatccccaggaaag
ccagggtttccgggagctgtaggttccaaaggtgctaaaggaattccaggtgaaccaggt
ctggatggatttccagggttaaaaggtttccaaggtgatccaggtcgtgagggattacca
ggtcctccaggtttcactggacctcggggcgatggaggccctccagggctaccgggatta
cagggcaaaccaggcagttcaggaaaaccaggtacaccagggcctgcaggaccaaaagga
attgcaggtgaaattttaggagcagcaccaggcacccgaggggaagttggagaatttgga
ctcccaggattaaaaggtgtacaaggagaccaaggagtaacaggaattagaggaactggt
ggtactccaggctttccaggacccaaaggacagcgaggatccccaggtcttcttggtttg
cctggtctgccaggacgaccaggattgcatggattcccagggcttccagggcagcaagga
ccttccggcagaattggctcaccaggatttgttggtttggctggttccagaggggatcca
ggtgagcaaggtttccctggtcctgtgggcatgaaaggtctggccggagacaaaggtgaa
cttggtaacaaaggagcaccaggggcacctggcgtacctggtctccctggcatagaagga
atgcggggttttccagggttaaaaggtaccaaaggttcacctggtgttgaaggtttcaaa
ggtatgttgggcctgaaaggaaaaccaggattgaaaggactcaaaggcgaaattggctct
tttggcagtctgggaattaaaggtctacaaggggaacccggccataaaggtgaccgtggg
gaatcgggtccatcaggaaaaccaccagatatttttcaacacatgtatatggctaaaggt
gagaaaggagatataggacaagctggctcaaaaggcgagataggctttaaaggtaagaac
atgttaagtttttacgaacatcccctgatcttacatgtcatactggtttttggatcagct
agtcagattgaaggcaagaaaggagacgttggtcttaaaggagtgacaggtgttcagggg
tatccaggtacaactggaccccgtggcatatcaggtttccctggagccactggaatcagg
ggtgaaaagggtattgaaggaaccagaggtgatgttggtacatatggccttcctgggcaa
actggtgatcgaggagatactataaacttaccaggaagcaagggcctgaaaggagaagct
ggcataactggatcattgggtgtgaaaggaaccctaggagacaaaggagaaataggtgat
cctggtattattggcattgaaggcttgaagggctcccaaggttttcctggcttaaaaggg
gaacaaggcttcccagggctggttggatcaccaggatcacagggagagccaggtattcct
ggatttcaaggtgtaaaaggaagtcacggatggcctggctttgcaggacaagaaggttta
cctggcttccgaggaatcagtggattggatggtttgccaggcactaaaggcttaccaggg
tccccaggtccagatgcatatgggactgcaggtttcccaggtatttatggtgacaaaggg
gaagcaggagaaccgagcagaattgaaggcaccagaggagctccaggtcaaaaaggagag
agaggcaatccaggagaacgaggcccagttggtgacccaggagctgacggaattccaggc
tttcctggcacttcaaacatttcaggaatacctggtgatatgggttcccaaggtttagat
ggagtgccaggctatccagggcctcagggcagacctggacccccagctctaccaggaagc
aaaggagaagagggtcaaataggtgtgcttggagaagatggtcaaaaaggatctagaggt
gaccctggactacaggggagacctggaatttcagggtaccctggaccaaaaggctataaa
ggtgcgcaaggtctcatgggctctcttggctttgtgggagtatctggtgacagagggccc
actggacccaagggcgacagaggacaaacaggtattgagggacctcctggatctcctggg
ctgcctgcagtccctccaaagctggtcactcaaaagggtgcaacaggcccacaaggaaaa
atatttcccccagganatccaggtgacccaggttttagaggcccaccgggtaaaccaggg
ttccaaggaagaggcggcatatcagctccttcaggtttcagaggagatcaaggaccatca
ggttttccgggtctggcaggcattgagggtgaaccaggccatccaggtaaccctgggcta
ccaggtatgccaggtcgcagtgttaatattgggtaccttctggtgaagcatagccagtct
gagcaagagccaatgtgtccagttggtatgaataaactctggagtggctacagtctactg
tactttgaaggacaggaaaaagcacataaccaggaccttgggctggctggatcctgtttg
gctcgctttagtaccatgcctttcctctactgtaaccctggggacctctgttattatgca
aatcgaaatgataaatcctactggctctcaactacagcacctcttccaatgatgcctgtg
gcagaaaacgaaattagaccatatatcagtcgttgttctgtctgtgaagccccagctgtt
gcaattgctgtgcatagtcaagatgtgtctattccacactgccctgaaggatggcgcagt
ttatggattggatattccttccttatgcacactggagctggtgatgaaggtggaggacag
tcactggtttctcctgggagctgtctggaagacttcagagctactcctttcattgaatgc
aatggtgcccgaggaacctgccactactatgcaaacaagtatagcttctggcttaccact
attaaccaggaattccagagctttccctcagcagatacgttgaaggcaggtctcatcaga
actcatatcagcagatgtcaagtctgcatgaaaaatttgtaa
DBGET
integrated database retrieval system
