Pelodiscus sinensis (Chinese soft-shelled turtle): 102456223
Help
Entry
102456223 CDS
T02980
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss04510
Focal adhesion
pss04512
ECM-receptor interaction
pss04518
Integrin signaling
pss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102456223
04518 Integrin signaling
102456223
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102456223
09142 Cell motility
04820 Cytoskeleton in muscle cells
102456223
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pss04147
]
102456223
00536 Glycosaminoglycan binding proteins [BR:
pss00536
]
102456223
Exosome [BR:
pss04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102456223
Glycosaminoglycan binding proteins [BR:
pss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102456223
Hyaluronan
Extracellular matrix or blood plasma proteins
102456223
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA_SIBA-E
VWA_3
Radical_SAM
UTP20_N
NAPRTase
Motif
Other DBs
NCBI-GeneID:
102456223
NCBI-ProteinID:
XP_014430801
Ensembl:
ENSPSIG00000017688
LinkDB
All DBs
Position
Unknown
AA seq
1597 aa
AA seq
DB search
MKMLLTLFLFLIGSQTSVTQTPASTSADIVLLVDSSSSLGDKTFPSVKAFISKTIGLLTA
TPTQYRIALAQYSDDLHLEFQLDTHKTKNAMLNHVKKNFVFKGGSVRTGNALQKVHSAYF
KGPISRRDKNRILVVLTSGKSEDDVEKPANDLKSDGVKIIALGMPDTDLKELQSMATPRF
SQKFRTLRDLSMFSQNMTKIIESVIQPPPDVIQPPPDVIQPPADIKKGEVCMSNFVADVV
FIVDEGVSIPQSEDIKQFLQNAIDSLDVQKDCVQIGLVTYSSKPRLLSLLSEEMSKTAIL
EKIKGFSPREGKANIGAAINATRKDVFSVRFGSRKAQRIEQIAILITHRPSEDNVSEAAL
GLRKAGVTVFTVGVENADDTQLTQIASHPPQLYVTKLTAFSNLPGQAKNLQKKLLNQIQD
KMYFQSERRELLKAGCMDTEEADIYMLIDGSTSISSDAFREIKHFLKEVIKMFNIGPNKV
RFGAVQYSHNFRTEFKLNDYNTKNELEKAIDNIRQIYGDTYIGAALTYMQPLLKEARNQR
PGGVPCYLIVLTDGVSHDNVKEPAEQLRNEKINIYAVGVKGANEEQLHEIAGPNNKPFFV
QEFDALKTIKNEIVQRICTGEACREMRADIMFLVDSSGSIGQDNFSKMKSFMKELVKKSD
IGADRVQVGVVQFSGTNQEEFQLNRYSSKSDIFSAIDGMSLMGDITLTGGALTFVSDYFK
PSKGARPGVKKFLILITDGVAGDEVKSPAEKLQNQGVVIFSVGVFNANKTQLEEISGTRK
LVFYVEKFDILKHIEDELIFRICSPYEECKRIERLDVVFVIDESGSISREQYETMKEFMI
TLVKKSDVAPDRVQFGAVKYSDEPTMLFYLNEYNAKSKIVEAIQKDTSRGGSTYTAKAIA
YAESLFAKEHGSRKDKGVPQILIVITDGVSHDTAQLNDTAKRLRDKGIIIYAVGIKDANS
GELLGMAGSEDKYFYVDTFEGLKNTSVVVSDTVCGDSKPECEIKADLVFLIDGSNSIDPN
DFIKMKKFLESVIDLIFYEHNVQVGIAQYSDLYKKEVDLGAFPGKTELKARIQNIKQITG
YTLIGSALTNVKEFFAPSGSKRATRNVRPILLVLTDGESQDNVAEPAENLRKQGVDMYAI
GVGNINDFQLMQIAGAAERKYTVDDFSKLKSIKKRLVDDVCNPVVPTTCFVDIVVGFDIS
SQKRGDHLFDGQFQLKTYLPGILKALTSLSSLSCNVGTKTQSSVAVYLSNTLTPGSSKFE
IDSEKILNILRNLTINTTSYLNSNFLESLWKTFTSNSDDQNRKKVLLVFSDGLDENVEKL
EQKSEELRKKGLNALITVVLERASNSHELQYIEFGRGSEYNNPLTIDKQNIANALALSVR
NMAERICCSVPCMCIGDGGAAGYRGGQGDKGAKGVKGHAGHLGEDGELGSRGLTGLPGEQ
GIKGCEGSRGLKGYRGISGQKGNQGDNGIDGVNGEQGSLGHPGIKGEKGDLGNMGNPGPR
GPFGDRGEKGFRGDPGNSGLNNVERGPKGSKGDWGRQGEKGPMGSPGSPGSRGTPGPNGR
RGAPGLQIRVVEEFIVKTIGLKIQAKIWQCMLVVLTD
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgctgctgactttgttcctcttccttattgggagtcaaacttcagtaactcaa
acacctgcctctacatctgcagatattgtcctattggttgacagctctagtagcctggga
gacaagacgttcccctctgtgaaggcttttattagcaaaacgatcggtcttctaacagcg
actcctactcaataccgtattgcacttgcccaatatagtgatgatttgcaccttgaattt
cagctggacacccataaaactaagaatgcaatgctgaaccatgtcaaaaagaactttgta
ttcaagggtgggtctgtaagaacaggcaatgccctccaaaaagttcacagtgcctatttt
aaaggaccaattagcagaagagacaaaaacagaattttagtagttctgacttcaggaaaa
tccgaggatgatgtggaaaagcctgccaatgatttgaaaagtgatggggtaaaaattata
gccctggggatgcctgatactgatcttaaagaactgcagtcaatggctacacctcgcttt
tcgcaaaagtttcgcacattgagggatcttagtatgttttctcaaaacatgaccaagata
attgagagtgttattcagccacccccagatgttattcaaccacccccagatgttattcaa
ccacccgcagatattaagaaaggagaagtttgcatgagtaattttgttgctgatgttgtg
ttcatagtagatgagggggtttcaataccacaatctgaagatattaaacaattcctgcaa
aatgcaattgactctcttgatgtgcagaaggattgtgtacagattggcctagtgacatac
agcagcaagccacgtttgttatctctactgagtgaagaaatgagcaaaactgccattttg
gagaaaataaaaggcttttctccaagggaagggaaggccaatatcggtgctgccattaat
gctacaaggaaagacgtcttcagtgtaagatttggaagtagaaaggcccaaaggatagag
caaatagccattctgatcacccacagaccttctgaagacaacgtaagtgaggcagctctt
ggtcttcggaaagcaggtgtgaccgtattcaccgtaggtgttgaaaatgctgatgacacc
cagttaacccagatagcatctcatccgccacagctatatgttactaagctgacggcattt
tctaacctaccaggacaagccaaaaatttacaaaagaaactcctgaatcaaattcaagac
aagatgtatttccagtctgaaagaagagaactacttaaagcaggatgtatggacacagag
gaagctgatatttatatgctcattgatggctcaacaagcatttcttctgatgccttcaga
gagatcaaacattttttgaaggaagtgattaagatgtttaacataggaccgaataaagtt
cgctttggagctgtacaatattcacacaactttcgcacagagtttaaacttaatgactac
aacacaaaaaatgagttagagaaagccattgacaacattaggcaaatatacggggatacc
tatattggagcagctctgacttacatgcagccactgcttaaagaggcaaggaatcagcga
cctggtggggtgccttgttacctcattgtcttaacagatggggtgtcacatgacaatgta
aaggagcctgctgagcagctgaggaatgagaagatcaatatttatgctgtaggtgttaaa
ggtgcaaacgaagaacagctgcatgaaattgcagggccaaacaacaagcctttctttgtg
caagagtttgacgccttgaaaaccataaaaaatgaaattgttcaaaggatctgtactggg
gaagcctgcagagaaatgagagctgacatcatgttcctagtggacagttctggaagcata
gggcaagacaacttttcgaaaatgaaaagctttatgaaagaactggtgaagaaatctgac
attggtgcagaccgagtgcaggttggggtcgtccagttcagcggcacaaaccaggaagaa
ttccagcttaaccgatactcttctaaaagtgatattttcagtgctattgatggaatgtca
ctcatgggggacattacactaacaggaggcgcattgacattcgtgtctgattatttcaag
ccttccaagggtgcacgtcctggtgtcaaaaagtttcttatcctgattacagatggggtg
gcaggggatgaagtaaaatctccagcagaaaagctacaaaatcaaggtgtcgtcatcttc
tctgttggggtatttaatgcaaataaaactcagctagaagaaattagtgggacgcgtaag
ctggttttttatgttgagaagtttgatattttgaagcatatagaagatgagctcatcttt
agaatatgcagtccctatgaagagtgcaaaaggatagaaagattagacgttgtgtttgtg
atagatgaatcaggaagcataagtcgcgaacagtacgagaccatgaaagagttcatgatc
actttggtaaaaaaatctgatgtcgctccagacagagttcaatttggagcagtaaaatat
tctgatgaaccaacaatgcttttctaccttaacgagtacaatgcaaaatccaagattgtg
gaggctatccagaaagacacatctcgaggaggctcaacgtatacagccaaggcaattgcc
tacgcagaatctctatttgctaaggagcatggtagccgcaaagacaagggagttccccag
attcttatagtgataacagacggtgtctcccatgataccgcacagctcaatgacacagcc
aagagattaagagacaaggggattattatctatgctgttgggataaaagacgcaaattct
ggtgagcttttgggcatggctggttcagaagacaaatatttctatgtggatacatttgaa
ggactcaaaaacacatcagtagtagtatctgatacagtatgtggtgattcaaaaccagag
tgtgaaattaaagcagatcttgttttcttgattgatggctccaatagtatagatccaaat
gacttcatcaagatgaagaaattcttggaatctgtaatcgatctgattttttatgaacac
aatgttcaagttggcattgcccagtacagtgacttgtataaaaaagaagtcgacctaggt
gcttttccaggcaaaacagaactgaaagctcgaattcagaacattaaacagattacagga
tatactttaattggaagtgcacttacaaatgtgaaggaattctttgccccgtcaggcagc
aaaagagcaacaagaaatgttcgaccaattttgctggtactcactgatggggagtcacag
gataatgttgctgaaccagcagaaaatctgagaaagcaaggtgttgatatgtatgctata
ggagttgggaatattaatgacttccagctcatgcagatagctggtgctgcagaaaggaag
tacactgtcgatgatttcagtaagctgaagagcattaaaaaaagattagttgacgatgta
tgcaaccctgttgttcctacaacttgttttgtggatattgttgtgggatttgatatctct
tcgcaaaagagaggtgaccatttatttgatggacagttccagttgaaaacatatctccct
ggcattctgaaagctcttacatccttaagtagtctgagttgcaatgtaggaacaaagaca
cagagcagtgtggctgtttatctgagcaacacacttacacctgggtcttcaaagttcgaa
attgacagcgagaaaattctgaacatcctaagaaatctcaccatcaatacaacatcttat
ctcaatagcaactttctggagtcgctttggaaaacatttacaagcaattctgatgatcag
aatcgaaagaaggttttacttgtattttcagatggtttggatgaaaatgtggaaaaactt
gaacaaaagtcagaagaactcagaaagaaaggcttgaatgcactgataacggttgttctg
gaaagagcctctaattctcatgagcttcagtatattgagtttggaagaggatctgaatac
aataacccactaaccatagacaagcaaaatattgccaacgctctagccctctctgtgcgc
aacatggctgaaaggatatgctgttcagtgccttgcatgtgcattggggacggaggtgca
gctggctaccgagggggacaaggagataaaggagctaaaggtgtaaaaggccatgcagga
cacttaggagaagacggagagctgggttcaagaggactaactgggctgccgggagaacaa
gggattaagggatgcgagggtagtagaggtcttaaaggataccgaggaatatctggtcaa
aagggaaaccaaggggacaacgggattgatggagttaatggagagcagggatcacttggg
catccaggaataaaaggagaaaagggtgacctaggcaacatgggcaatccagggccaaga
ggaccctttggtgaccgtggtgagaagggcttccgaggagatcctggtaactctggattg
aacaatgtcgaaagggggcctaagggttcaaaaggagactggggaagacagggtgaaaaa
ggaccaatggggtcaccaggctcaccaggctctaggggaaccccgggaccaaatggtcga
agaggagccccgggtttacagataagggtagttgaagaatttattgtaaaaactataggt
ctgaagatccaagcaaaaatttggcagtgcatgctggtagtcttgacagactga
DBGET
integrated database retrieval system
