Pelodiscus sinensis (Chinese soft-shelled turtle): 102456308
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Entry
102456308 CDS
T02980
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102456308 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pss03400
]
102456308 (MSH6)
DNA repair and recombination proteins [BR:
pss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102456308 (MSH6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
102456308
NCBI-ProteinID:
XP_075781208
Ensembl:
ENSPSIG00000004960
LinkDB
All DBs
Position
3:144158407..144187126
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AA seq
1344 aa
AA seq
DB search
MSRQSTLLRFFPKAPAPGAGPARSPPARRRGWAPRSGPAAAETGTPGGVAARGPGQGRSK
AARSASVSCDYSPGDLVWAKMEGYPWWPCLVYNHPTEGTLVRVKGKSSRVHVQFFDESPT
RGWVSVKYLKPYKGSAVKETERGGMFYSSKPEIKRAMEMADDAMRKDKTKRLELAVCNEP
SDAEDEEEMEVSESASGNSEDYDSEDEERKKKLLGSKWRSGGKAKKRRVLDSDSDNEGSD
EEFKPDAKDEASSDEASSRLEEGESASSESDTKMDTDGSVKVPSKRKRESDFKPTKRNSL
EKDLPETPKRAVTISLEIKSRLTSFVAPENFESQPNVSSGGVSSSNIWEHDKLEWLQEGK
KRDGCRRRQTDPHYDPGTLYVPDDYLNKCTPGMRKWWQLKSQNFDAVIFYKVGKFYELYH
MDAVTGVNELGLIFMKGIWAHSGFPEIAFGRFSDVLVQKGYKVVRVEQTETPEMMEARCR
SLAHPTKFDRVVRREICRIITKGTQTYGVLDGEPSEELNKYLLSVKEKVEDSSGHYRAYG
VCFVDTSVGKFSVGQFPDDRHCSRFRTLVAHYTPVQILFEKGNLSADTHKILKGSLSSSM
QEGLISGSQFWNASKTLKTLIEEGYFEDKQNVDNGFILPPVIKSMTSESDSLGLTPAENC
ELALSALGGCVFYLKKCLIDQELLSLANFEEYVPVDIDVTKAKGSNSFFAKTNQRMVLDG
VTLTNLEILQNGTTGTTEGTLLEKIDTCCTPFGKRLLKRWICAPLCNPHSINDRLDAIED
LVAVPDKMFDVSECLKKLPDLERLLSKIHSIGSPLKSDTHPDNRAIFYEETRYSKKKITD
FLSALEGFKIMLETIEIMEEIAADFRSKILKQLVTLKSKNPEGCFPDLSAELKRWDTAFD
HNEARKTGVITPKAGFDPDYDTALKDIKDIEEKLQEYLVKQRKRLGLRAMLYWGAGKNRY
QMEIPENAISHNLPEEYELKSTRKGYKRYWTKEIEKMLAEMVNAEERRDAALKDCMRRLF
YNFDKNSKDWQTAVECFAVLDVLMCLARYSQESDGPFCRPVLLLPELSTPPFLELKGSRH
PCITKTFFGDDFIPNDIVIGSKNEDEDCNSEAYCVLVTGPNMGGKSTLMRQAGLLVIMAQ
LGCYVPAETCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDEL
GRGTATFDGTAIASAVVKELAENIKCRTLFSTHYYSLVEDYSHSAAVRLGHMACMVEKEN
EDPSQETITFLYKFIRGACPKSYGFNAAKLANIPEEIIQKGHKKARDFEKVTLSLRLFRH
LCLVAENAGRDKAVHKLMTAFNNL
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcagagcaccctgctccgcttcttccccaaggccccggccccgggagccggc
ccggcccgctcccccccggccaggcgcaggggctgggctccccgcagcggccctgctgca
gctgagacggggacgcccggcggagtcgcggcccgggggcccgggcaggggcgaagcaag
gccgcgcggagcgccagtgtctcctgtgattattcacctggtgatttggtttgggctaag
atggaagggtacccctggtggccatgtcttgtgtataaccacccaactgaaggaacacta
gtcagagtgaaaggaaaatcttcccgtgtgcatgtacagttttttgatgagagcccaaca
aggggctgggttagcgttaaatacttaaagccatataaagggtcagcagttaaggaaaca
gagaggggaggtatgttttatagttcaaagcctgaaattaagagagcaatggaaatggca
gatgatgctatgcgcaaagataaaactaagcggcttgaactggcagtatgcaatgaacct
tcagatgctgaagatgaggaagagatggaggttagtgaaagtgcttctggcaacagtgaa
gattatgatagcgaggatgaggagagaaaaaaaaagctgctgggaagcaagtggagaagt
ggcgggaaagctaaaaaacgaagagtgttggactccgacagtgataatgaaggttcagat
gaagagtttaagccagatgctaaagatgaagcaagcagtgatgaagcaagcagcagactg
gaggaaggtgaatctgccagctctgagtcagacacaaagatggatacagatggttctgtg
aaagtcccttctaaacgaaagagagaatctgacttcaagcccactaaaaggaacagcttg
gaaaaggaccttcctgaaacaccaaaaagagcggtaactatttcattagaaatcaagtca
aggcttacctcttttgtagcacctgaaaactttgagtctcagccaaatgttagcagtgga
ggagttagtagttctaatatatgggaacatgataaacttgaatggcttcaggaagggaaa
aaaagagatggatgtagaagacggcaaactgatcctcattatgacccaggtaccctttat
gtgccagacgactaccttaacaagtgtaccccaggaatgcggaagtggtggcagctaaag
tctcaaaactttgatgctgtaatcttctacaaagttgggaagttctatgagttgtatcat
atggatgcagtcactggtgtaaatgagctgggactgatatttatgaaaggtatttgggcc
cattcaggttttccagaaattgcatttggcagattttctgatgttctagtacaaaagggg
tacaaagtagtccgggttgagcagacagagactcctgagatgatggaagcacgctgcaga
tccctggcccacccaacgaagtttgacagggttgtacgcagagaaatatgcaggataatt
accaaaggaacacagacctatggtgttctggatggtgaaccttctgaggaacttaacaaa
taccttctcagtgtaaaagaaaaagttgaagactcatctgggcactaccgtgcatatggt
gtctgttttgttgacacatcagtgggaaaattttctgtgggccagtttccagatgaccgc
cactgctcaagattcagaactttggtggcacactacactcctgtgcagatcctgtttgag
aagggaaatctgtctgctgacacccacaagatactaaagggctcactgtcgtcttccatg
caagaaggcttgatctctggctcccaattctggaatgcatctaaaacattgaaaactcta
attgaagagggatactttgaggataagcaaaatgttgataatgggtttattttgccgcct
gtgatcaaatccatgacatcagaaagtgactctctgggtcttactcctgctgaaaactgt
gagttagccctgtctgctcttggtggatgtgtcttttacctcaagaaatgccttattgat
caggagcttttatctctggcaaactttgaggagtatgttcctgtggatattgatgttaca
aaagctaagggatcaaacagtttttttgctaaaactaatcagcggatggtgttggatggg
gtgacgctaacaaacttggaaatcctgcagaatggaactactggcactacagaaggcaca
ttgctggaaaagattgacacttgttgtaccccttttggaaagcgactcttgaaacggtgg
atatgtgcacccctctgtaatccacattctatcaatgatcgtttggatgcaattgaagat
cttgtggcagttcctgataaaatgtttgatgttagtgaatgcctgaagaaacttccagac
cttgaaaggctcctgagcaaaattcacagtattggctcaccacttaaaagtgacactcat
ccagacaacagggctattttttatgaagaaaccagatacagcaaaaaaaagatcactgac
ttcttgtctgcactggaaggatttaagataatgcttgagaccatagagattatggaagaa
attgctgctgatttcagatctaaaatacttaagcagttagtcaccctcaagtctaaaaat
ccagagggctgttttccagacctgagtgcagaactgaaaagatgggatactgcttttgat
cataatgaggctcggaagactggagtgatcactcctaaggctggatttgacccagattat
gatacagcattaaaggatattaaagacattgaagagaaacttcaggaatatttagttaaa
caacgcaaacgacttggactcagagctatgctgtattggggagcaggcaaaaaccgctac
caaatggaaatcccagaaaatgcaatatcacataatttgcctgaggaatatgaactgaag
tccaccagaaagggttataaacgttattggaccaaggagatagagaagatgctggcagag
atggtcaatgctgaagaacggagagatgcagccctgaaagactgtatgaggagactgttc
tacaactttgataaaaatagcaaggactggcaaacagcagtggaatgctttgctgtgtta
gatgtcttgatgtgccttgctcgctatagtcaagagagtgatggaccattctgccgacct
gtacttctactgccagaactgagtactccacctttcttggaacttaaaggttcacgccat
ccatgcattacaaaaacattttttggagatgattttattccgaatgatattgtgattggc
tccaaaaatgaagatgaagactgcaatagtgaagcctactgtgttttagtgactggccca
aacatgggtggcaaatctacattaatgagacaggctggccttttggtaataatggctcaa
ttgggatgctatgtacctgctgaaacttgcaggcttactcctattgacagagtatttaca
agactaggtgcctcggacagaattatgtcaggagagagtaccttttttgttgaactgagc
gagacttccagtatactccagcatgcaacagagcattcccttgtgcttgtggatgaacta
ggtagagggacggctacttttgatggtaccgctatagcaagtgcagttgttaaagaactt
gcagaaaatataaagtgtcgtacactgttttcgacacactattattcattagtagaggac
tattcacatagtgctgctgtgcgactaggccatatggcctgtatggttgaaaaggagaat
gaagatccaagccaagaaactattacattcctttataaattcattagaggagcttgtcct
aaaagctatggcttcaatgcagcaaaacttgctaatattccagaggaaattatccagaaa
ggccataaaaaagccagagactttgagaaagttacactttcactgagactgtttaggcac
ctttgcctggtggcagaaaatgcaggaagagataaagctgtacataaactgatgactgcg
ttcaataatctgtaa
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integrated database retrieval system
