KEGG   Pelodiscus sinensis (Chinese soft-shelled turtle): 102457115
Entry
102457115         CDS       T02980                                 
Symbol
VPS4A
Name
(RefSeq) vacuolar protein sorting-associated protein 4A
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03250  Viral life cycle - HIV-1
pss04144  Endocytosis
pss04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:pss00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    102457115 (VPS4A)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    102457115 (VPS4A)
  09143 Cell growth and death
   04217 Necroptosis
    102457115 (VPS4A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pss04131]
    102457115 (VPS4A)
   03400 DNA repair and recombination proteins [BR:pss03400]
    102457115 (VPS4A)
Membrane trafficking [BR:pss04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    102457115 (VPS4A)
DNA repair and recombination proteins [BR:pss03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    102457115 (VPS4A)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_16 AAA_14 AAA_22 AAA_17 AAA_5 AAA_25 RuvB_N IstB_IS21 DUF815 AAA_18 AAA_2 AAA_33 RNA_helicase nSTAND3 AAA_24 PhoH NACHT AAA_28 ResIII Mg_chelatase AAA_7 Parvo_NS1 YCII bpMoxR AAA_30 DUF5906 YhdB Viral_helicase1
Other DBs
NCBI-GeneID: 102457115
NCBI-ProteinID: XP_025040003
LinkDB
Position
Unknown
AA seq 491 aa
MGRRFAFLSLWGDSRQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDK
AKESIRAKCVQYLDRAEKLKDYLRSKDRQSKKPVKESQNDSKGSDSDSEGENPEKKKLQE
QLMGAVVMEKPNVRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGT
GKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDS
LCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYI
PLPEEAARAQMFRLHLGNRPHSLTEANIHELARKTDGYSGADISIIVRGSLGPVPSGLLQ
VRGPSRTNPSVTVDDLLTPCSPGDPGAIEMTWMELACTTSSLGPVPSGLLQVRGPSRTNP
SVTVDDLLTPCSPGDPGAIEMTWMEVPSDKLLEPVISMSDMLRSLATTRPTVNAEDLLKV
KKFSEDFGQEG
NT seq 1476 nt   +upstreamnt  +downstreamnt
atgggcaggcgtttcgctttcctgtccctctggggtgactctcgccaaaaagccattgat
ctggtaacaaaagcaacggaggaggataaggccaagaactatgaggaggcgctgcggctg
taccagcatgctgtggagtacttcttacatgccatcaagtacgaggctcacagcgacaag
gcgaaggagagcatccgggcgaagtgcgtgcagtacctggaccgggcggagaagctgaag
gattatctacgcagcaaagaccgacaaagcaagaagcccgtcaaggagtctcagaatgac
agcaaggggagcgacagcgacagcgagggcgagaaccctgagaagaagaagctgcaagaa
cagctgatgggcgccgtagtgatggagaagccgaacgtgcggtggaacgacgtggccggg
ctggagggcgccaaggaggccctgaaggaggccgtcattctacccatcaagttcccacac
ttgttcacaggtaaacgcactccctggcgcgggatcctgctcttcgggcccccgggcacg
ggcaagtcctacctggccaaggccgtggccaccgaggccaacaactccaccttcttctcc
gtctcctcctcggacctgatgtccaagtggctgggggagagcgagaagctggtgaagaat
ctctttgagctggcccggcagcacaaaccctccatcatcttcatcgacgaggtggattcc
ctgtgcggctcccgcaacgagaacgagagcgaggccgcccgcaggatcaagacggagttc
ctggtgcagatgcagggtgtcggcaataacaacgacgggaccctggtgctgggggccacg
aacatcccctgggtcctggactcggccattagacgaaggtttgagaagcgcatctacatc
ccgctgccggaggaggcggcccgcgcccagatgttccggctgcacctggggaacaggccc
cacagcctgacggaggccaacatccacgagctggccaggaagacggacggctactcggga
gccgacatcagcatcatcgtgcgaggcagcctggggcctgtcccctctggcctgttgcag
gtgcgaggcccgtctcgaaccaatcccagtgtaaccgttgacgacctcctgaccccatgc
tcgccaggagaccccggggccattgagatgacttggatggagctcgcctgcaccaccagc
agcctggggcctgtcccctctggcctgttgcaggtgcgaggcccgtctcgaaccaatccc
agtgtaaccgttgacgacctcctgaccccatgctcgccaggagaccccggggccattgag
atgacttggatggaggtgccgagtgacaaactgctggagccagtgatctccatgtcagac
atgctgcgctcgctggccaccacccgccccaccgtgaatgcggaggacctcctgaaggtg
aagaaattctcagaggactttggacaggaaggttaa

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