Pelodiscus sinensis (Chinese soft-shelled turtle): 102457515
Help
Entry
102457515 CDS
T02980
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102457515 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pss03019
]
102457515 (MTREX)
03041 Spliceosome [BR:
pss03041
]
102457515 (MTREX)
03009 Ribosome biogenesis [BR:
pss03009
]
102457515 (MTREX)
03016 Transfer RNA biogenesis [BR:
pss03016
]
102457515 (MTREX)
Enzymes [BR:
pss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102457515 (MTREX)
Messenger RNA biogenesis [BR:
pss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102457515 (MTREX)
Spliceosome [BR:
pss03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102457515 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
102457515 (MTREX)
Ribosome biogenesis [BR:
pss03009
]
Eukaryotic type
Pre-60S particles
Helicases
102457515 (MTREX)
Transfer RNA biogenesis [BR:
pss03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102457515 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
102457515
NCBI-ProteinID:
XP_006139612
Ensembl:
ENSPSIG00000012150
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MADAFGDELFSVFEDDSAAAGAKKGKAAEAAGKAGKRSDGKSPAGTMNIPGKTKREAEID
STDYATFGKKTKIEDVSEDINLADLMPKVKVQAVETVEGCTHEVALPANEDFVALKPRSG
KAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG
PSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDC
LSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGIN
MPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ
LLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEE
QYNKIEIPNEESVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEDDDFG
WGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPDEKGEMQVVP
VLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGL
KKVIQKIEAFEHRMYSHPLHNDSSLETVYKLCERKAQIAVDIRTAKRELKKARTVLQMDE
LKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLS
CFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVV
YTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKI
KRDIVFAASLYL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgagctgttcagcgtgttcgaggacgattccgccgccgct
ggggccaagaagggcaaagcggccgaggctgccggcaaggctgggaaacgctcagatggc
aaatctccagcaggcactatgaacatcccagggaaaaccaaaagagaagcagagattgat
agcacagattatgccacttttggaaagaaaaccaagatagaggatgtttcagaagatatt
aatctagcagacctgatgccaaaagtaaaagtgcaagctgttgagactgttgaaggttgt
acacatgaggttgcacttcctgcaaatgaagactttgtagccctcaagccgagaagtgga
aaagctgcaaaggaatatccattcattcttgatgcttttcaaagagaagccattctttgt
gtggataataatcagtctgttttagtgtcggctcatacatcagctggcaaaactgtgtgt
gcagagtatgcaattgccttggctttgcgggagaaacagcgtgtgatatttaccagtccc
attaaagctctgagtaaccagaagtatcgtgagatgtatgaagaatttcaggatgttggt
ttgatgactggagatgtcaccattaatcctacagcttcttgtcttgtgatgacaacagag
attttgagaagtatgctctacagaggttctgaggttatgcgagaagttgcttgggttata
tttgatgaaatacattatatgagagactcagaacgtggtgtggtatgggaggagaccatt
attttgctacctgacaatgttcactatgtgtttctttctgccactattccgaatgcccgc
cagtttgctgagtggatttgccatcttcataaacagccttgccatgtcatttacacagat
tatcgacctactcctctgcaacattatatcttcccagcaggaggggatggactccacctt
gtggttgatgaaaatggtgatttcagagaagataactttaacacggcaatgcaagtactt
agagatgcaggtgacttagcaaaaggagaccagaagggcaggaaaggaggaacaaaagga
ccatcaaatgtatttaagatagtgaaaatgatcatggaaaggaatttccagcctgtaatt
atattcagtttcagtaagaaagattgtgaagcctatgcccttcagatgacaaaattagac
tttaatacagatgaagaaaagaagatggttgaagaagtatttaataatgcaattgactgt
ctgtctgatgaagacaaaaagctccctcaggttgagcatgtgcttcctcttttgaagcga
ggaattggcatccatcatggtggtttgctcccaattttaaaggaaacaattgaaattctt
ttttctgaaggattgataaaggctttatttgcaactgagacctttgctatgggaattaat
atgccggctaggacagtgctgttcacaagtgcccgtaaatttgatgggaaagatttcaga
tggatctcgtcaggtgaatatattcagatgtctggtcgtgcaggacgtcgcggtatggat
gacagaggaatagtaattcttatggtggatgagaaaatgagtccaacaattggcaaacaa
cttcttaaggggtcggcggatcctctaaacagtgcttttcacttgacttacaacatggta
ttgaacttgctccgggtagaagaaattaatcctgaatacatgttagaaaaatcgttctac
caatttcaacactacagagctattccaggagtagtagaaaaggtaaataaattagaagaa
cagtacaacaaaatagaaattccaaatgaggaaagcgtggtcatctactataaaatccgg
cagcagcttgctaagctgggtaaagaaattgaagaatatgttcacaagccaaaatactgc
ttgccgtttttacagccaggccggctggtaaaggtaaaaaatgaagatgatgattttggc
tggggagtggttgttaacttctccaagaaatcaaatgttaagcctaactctggtgaactg
gacccattatacgtggttgaagtcttgttacactgtagcaaagagagtttgaaaaattct
gctactgaggctgcaaagccagcaaagcctgatgagaaaggagagatgcaggttgttcct
gttttggtgcatcttctctcagctatcagcagtgtccgactttacatacccaaagacctg
aggccaattgacaacaggcaaagtgtgttaaaatctatacaggaagtacagaagaggttc
cccgatggagttccattattggaccccattgatgatatgggcatcaaagaccaaggactg
aaaaaagtcatccaaaaaatagaggcttttgaacataggatgtattcacatccacttcac
aatgattccagtttggaaactgtatataagctctgcgaaagaaaagcacagattgcagtg
gatattagaacagcaaagcgtgaactgaagaaagctagaactgtcttacaaatggatgag
ctcaagtgccgcaaacgtgtattgagaagattgggttttgctacatcttctgatgtcata
gagatgaaaggacgagttgcttgtgaaatcagcagtgctgacgaactgctcctgacagaa
atgatgtttaatgggcttttcaatgatttatctgcagaacaagcaactgcattactaagc
tgctttgtatttcaagagaattctagcgagatgcccaaattgacagagcagttggcagga
ccacttcggcaaatgcaggaatgtgctaaaagaattgccaaagtttcagcagaagctaaa
ttggaaattgatgaggaaaattacctaaactctttcagacctaacctgatggatgtagta
tacacttgggcaaatggagctacttttgctcacatctgcaaaatgacagatgtctttgaa
ggtagcataattcgttgcatgaggaggctagaagaattgcttcgacagatgtgtcaggca
gcaaaggccattggaaacacagagctggaaaataagtttgcagaaggaattaccaaaatc
aagagagacatagtgtttgctgcaagcctctacctataa
DBGET
integrated database retrieval system
