Pelodiscus sinensis (Chinese soft-shelled turtle): 102457733
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Entry
102457733 CDS
T02980
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102457733 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pss03021
]
102457733 (PCF11)
03019 Messenger RNA biogenesis [BR:
pss03019
]
102457733 (PCF11)
Transcription machinery [BR:
pss03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102457733 (PCF11)
Messenger RNA biogenesis [BR:
pss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102457733 (PCF11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
102457733
NCBI-ProteinID:
XP_006132238
Ensembl:
ENSPSIG00000003118
LinkDB
All DBs
Position
1:complement(312836433..312868986)
Genome browser
AA seq
1745 aa
AA seq
DB search
MSGPESGPEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQIAK
APPTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDE
IFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESPVPASAVTSSG
TSTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQGAT
TMGSVQGPSKQHVSQTHMTVRAPYQASVQSEKHRPSPSSQFHDVKVVNRDPRLNRMAQQS
SHLKDQSHRKEFLSTIGNQSDLKGNKIIQSEKQNSSKQDKLKSSEKTQKKEPDQTEAKSK
SPSPLKSKLSHTKDANSQECESTKISEISKRDPRLKKHLQEKPDDKDDDTKEKRKSMERK
EKEEHKTSEHRPVGSRNKVINGIVQKQDSLSEDLEKQGGKLGRASNRKRSRSRSPKSRSP
STHSPKRRERRSPKRRLRSLSPTSSTPKIGKLRQSGPKQSHVEEFTLTTREERNSNKRNL
KQDARDPRRLKKTQEDRPQETANQHSTKSTPEPKENVENWQGSKSSKRWKSGWEESKNSQ
QNEEHQGGPSKSPHQRHREMWAASKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELL
KKANERLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGMKKKPLLSDAE
LTYYEHKAKLKRTQVQHSFPRLDLLDPDDILDYHLTDALLSGIECEQTKGIRGGQFDRKE
QFGERSRRHSPISGNRPFPDNLSPLEIRRRHDEQNSSKGTRSSKNFDPYDSWGESDEFRD
ALRQQGKSTPEFQNIDGDGFCKFDNREERQILGQSGVREEPRSPFGEHFKRPRYEDPEKT
FTESPGSRFGGIDVKPRLGPLMEDRPLFDGSPRQPAARGGGDGQVGHFVDGPSNNSSPRI
EGPLAQASMRFEGPLGQVGGVASSQFDGPVGQAGGGGTLRFDGPSGQIGPLRFEGPLGPV
GAGGALRFESPLGQVGSAIRFEGPVGGRRFEGPAGQTMGGLRFDGPHGQPSGGLRFEGPH
GQPMGSHGQPGSGLRFEGPHGQPMGPLGQPGSGLRFEGPHMQPVGPHGQPGSGLQFEGPH
GQPLGSHVQPGGGLRFEGPLGQSVGSHVQGGSGLRFEGPLAQPGLGPRFESPSVQTGGGL
RFEGPLGQTGPRFDGCHSSRFDSQPGQLSLLQRFDGLHGQPGPRFERAPSQQTPPRFDGP
PGQQPRFDTPVPQRFEGPQHQPDSRFAMPLGLQGPRFENVANTAASRLETIAYGQTGPYS
EHPSQTYSGPSHGMQFQRHEMFDTSQGPNFNGPPGPGAQNFPNPLNRTSGHYFDDKNLQG
PQYGNFSNLPNSVSVGNTPQPQQVPGISVSSQPGSYSQGQTYLPVLPQNPGSFVQTQAGS
VPLSYPDNHLGQLDVNELFSKLLKTGILKVSKPTDSTSAQVNETSTQPAPEEDEDDQDQS
EDQDIPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDISRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGADESCEICQEQFEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQNTSSFDC
TPSPSKTPVENPLNIMLNIVKQEIQEPCNSPKVKEEPVDTPATCIEESTPASTDIKTETD
KVEPV
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcccggagagcggccctgaggcccgcgaggacgcgtgccgcgattaccagtcg
tcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgaccatcctggcc
gaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaaatcgccaag
gctccccctacagagaagcttcctgttatgtaccttatggattccattgtcaagaatgtt
ggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatttgtgtattt
gaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccacctgggatgaa
attttccctttgaagaaactgtatgcccttgatgtcagagtcaactcattagatcctgct
tggccaattaaacctctacccccaaatgtgaatacttctagcatccatgtgaatcccaaa
tttttaaataaatcgcctgaggaatcacctgtacctgcttctgcagttacttcatctggt
acctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcagctaata
agacaacaactgttggcaaagcaaaaacagttattggaacttcaacagaaaaagttagag
ctggagttagaacagactaaagcacagttggcagtttctcttagtgttcaaggggcaact
actatgggttcagttcaaggaccttccaaacaacatgtttcacagactcatatgacagtc
agagctccttaccaggcttctgtgcaatctgaaaaacacagaccatctccatcttctcag
tttcatgatgtcaaagtagtaaacagagatcctcgtcttaataggatggctcaacagtct
tctcatcttaaagatcaaagtcataggaaagaatttctatctactataggaaatcaatct
gatctcaagggaaacaaaataattcagtccgaaaaacaaaattcatcaaagcaagacaag
ttaaaatcaagtgagaaaacacaaaagaaggaacctgatcagacagaggcaaaatctaaa
tcaccatcacctttgaaaagcaagttatcccatactaaagatgctaacagccaagaatgt
gaaagtaccaaaatatctgaaattagtaaaagagatccaagattaaaaaagcatcttcag
gagaagccagatgataaagatgacgacacaaaggaaaagagaaaaagtatggagagaaaa
gaaaaagaggaacataagacatcagaacacagacctgttggcagcagaaataaagtcatt
aatggaattgttcaaaaacaagactctctttcagaagacttagaaaaacagggtggaaaa
ctaggaagagccagtaatagaaaaagatcccggtcacgctctcctaagtctcgatctcca
tctacccattcaccaaagagaagagagaggagatcacccaaaagaagactgagaagtttg
tctcctacgtcctctactcctaagattggaaagctccgtcagtcagggcctaagcaatct
catgttgaggaatttacgctaactacaagagaagaaagaaattctaataagaggaacctt
aaacaggatgcacgagatccaaggagactgaaaaaaactcaagaagatagaccacaggaa
actgcaaatcagcattctacaaaatccactccagaaccaaaggagaatgtggaaaattgg
caaggttccaaatcgagcaaacgatggaaatctggttgggaggaaagtaaaaattcacaa
cagaatgaagaacatcaaggaggacctagtaaatctcctcatcagaggcacagggagatg
tgggcagctagtaaaggaattttgtcacctcgagccccaaagcaacagcatcgattaagt
gtagatgccaatttgcaaattcccaaagaactgacttctgcaagcaagcgagagctactt
aaaaaggcaaatgaacgtctaacatctggtgaaataacacaagatgaattccttgttgta
gctcatcagattcgtcaactgttccaatatcaggaaggaaagcacagatgcaatgtgtgg
gatagtcctacagaagaaaaatgtggtatgaagaagaaaccacttctttctgatgctgaa
ttaacatattatgaacataaggctaaattgaaaagaacacaagttcagcattcatttcca
agacttgatctgttagatcctgatgatatcttagactatcatttgactgatgcattgctc
tctggaatagaatgtgagcaaacaaaaggtatacgtggaggacagtttgacagaaaagag
caatttggagagaggtcaagacggcattctcccataagtggtaatagaccttttcctgat
aatctttcaccacttgagatccggcgaagacacgatgagcaaaattcttccaagggaaca
agaagttctaaaaactttgatccttatgatagctggggagaatcagatgagttcagagat
gcactcaggcaacaagggaaaagtacaccagagtttcagaacattgatggagatggattc
tgcaaatttgataatcgtgaagaaagacagatacttggacagagtggtgttcgagaggaa
ccaagatccccattcggtgaacatttcaagagacctagatatgaagatccagagaaaaca
tttacagagagtccaggatcaagatttgggggcattgatgtaaagccgagattaggtcca
ctcatggaagaccgacctctatttgatggctcgcctagacagcctgctgcaaggggaggg
ggagacggacaagttggtcattttgttgatggaccttctaataattcaagtcctagaatt
gaagggccacttgcacaggcttcaatgaggtttgaggggccactgggtcaggtgggagga
gtggctagctctcagtttgatgggcctgtaggacaggcagggggtgggggtaccctgagg
tttgatgggccatcagggcagataggccccctcagatttgaggggccccttgggccagta
ggtgcaggtggtgcactaaggtttgaaagcccactggggcaagtaggaagtgctataagg
tttgaggggcctgtgggtggtcgcaggtttgaggggcctgcaggccagactatgggtggc
ctcagatttgacgggcctcatggtcagccatctggtggcctcaggtttgagggaccccat
ggtcaacctatgggatctcatggtcaaccagggagtggactcagatttgaaggacctcat
ggtcaacctatggggcctcttggtcaaccagggtctggactcagatttgaggggccccat
atgcagccagtggggccccatggtcaaccaggaagtggtctccagtttgaggggccacat
ggtcagcctttggggtcacatgttcaaccaggaggaggtctgcgttttgaggggcctctt
gggcaatctgtagggtcacatgtgcaaggagggagtggtctcaggtttgagggtcctctt
gcccagccagggcttggtcctaggtttgagagtccatcagtccagacagggggtggactt
agatttgaagggcctttgggtcagactggtccaagatttgatggctgtcattcgtccaga
tttgatagtcaacctggtcagctgtcccttttacaaagatttgatggattacatggacaa
cctggcccaagatttgaaagggcacctagtcaacagacacctcctaggtttgatggccca
cctggacaacagccacgatttgatacaccagtacctcagaggtttgagggtcctcagcac
cagccagattcaaggtttgcaatgcctctaggtcttcaagggccaaggtttgaaaatgta
gctaacactgctgcctcaagactggaaacaatagcttatgggcaaactggtccatacagt
gaacatcccagtcagacttacagtggaccatcccatggtatgcagttccagaggcatgaa
atgtttgatacatctcaaggaccaaatttcaatgggccacctggccctggagcacagaac
tttcccaatccacttaacagaacatctggacattattttgatgacaagaatcttcagggt
cctcaatatggaaacttcagtaacttgcctaattctgtatcagtaggaaatactccgcag
ccacaacaggttcctggtatatctgtatcttctcaacctggatcttacagtcaaggacaa
acgtatttacctgtacttccacaaaatcccggaagctttgttcagactcaagcaggatcc
gttccactttcatatcctgataatcatcttggccagcttgatgtaaatgagttgttctct
aaactccttaagacaggaatcctcaaagtgtcaaaacctactgattccacttcagcacaa
gtgaatgaaacttctacccaaccagctccagaagaggacgaggatgaccaagatcagagt
gaggatcaagatatcccagatctcacgaactttacagttgaagaactaaaacagcgctat
gatagtgttataaatcgactatacactggtattcagtgttactcctgtggaatgaggttt
acaacttcacagactgatgtatatgcagatcacttggactggcattaccgacaaaatcgc
actgaaaaagacattagcagaaaaattactcacagaagatggtactacagtttaacagac
tggatagaatttgaagaaatagctgatctagaggaacgtgccaagagtcagttctttgaa
aaagtacatgaagaggttgtattgaagacacaagaagctgctaaagaaaaagagtttcaa
agtgttcctgctggaccagctggagcagatgagagctgtgaaatttgccaagagcaattt
gaacaatattgggatgaggaagaggaggagtggcatctcaagaatgctattagagtagaa
gaaaagatttatcatccatcatgttatgaagattaccaaaatacgtcatcatttgattgt
acaccatctcccagcaagacccctgtggaaaacccactaaatattatgttgaacattgtc
aaacaagaaatacaggagccctgtaacagtcctaaagtcaaagaagaacctgtcgacacc
cctgctacttgtatagaagagagcacacctgcatctacagatattaaaacagaaactgat
aaggttgaaccagtgtaa
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integrated database retrieval system
