KEGG   Pelodiscus sinensis (Chinese soft-shelled turtle): 102458094
Entry
102458094         CDS       T02980                                 
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss04382  Cornified envelope formation
pss04510  Focal adhesion
pss04512  ECM-receptor interaction
pss04518  Integrin signaling
pss04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pss00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102458094 (COL4A5)
   04518 Integrin signaling
    102458094 (COL4A5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102458094 (COL4A5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102458094 (COL4A5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    102458094 (COL4A5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pss04147]
    102458094 (COL4A5)
   00536 Glycosaminoglycan binding proteins [BR:pss00536]
    102458094 (COL4A5)
Exosome [BR:pss04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102458094 (COL4A5)
Glycosaminoglycan binding proteins [BR:pss00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102458094 (COL4A5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102458094
NCBI-ProteinID: XP_075797062
Ensembl: ENSPSIG00000007808
LinkDB
Position
13:complement(28722951..28868487)
AA seq 1679 aa
MSALRGCSRLAAGCLLLGLWGLSADAAACHGCTSGSKCDCSGVKGEKGERGFPGLEGQPG
LPGFPGPEGPPGPRGIKGDDGLPGPTGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGLQG
IPGCNGTKGERGFPGSPGFPGLQGPSGPPGLPGMKGDPGEIILSSASGQKGDQGFPGPPG
LPGPPGPFGIQGPIGPPGPPGLTGPRGLQGPPGPKGNMGLNFQGPKGEKGDQGLQGPPGP
PGQIGEQKRPNDVEFQKGDRGTPGERGPPGPSGPPGPPGPSGGMKGEKGEQGDPGKRGKP
GKDGDPGQPGRDGLPGDPGLNGDPGRDGEKGLKGERGLPGPPGIITGNGEQVGPKGSKGF
PGPPGPKGERGSPGTPGTPGLPGTPGVSGIGPPGPPGMRGERGQKGDQGLPGVSIPGQPG
LDGQPGLPGRPGAPGPPGPTIPPSDRLCERGPPGLPGRPGDQGFMGERGQKGDKGDTCLN
CIGSSISGPPGDRGPPGPPGIPGSPGFPGLKGEKGLAGLTGPVGPAGFPGSPGAPGRPGP
KGDPGDSQAFPGLKGEKGDTGFPGPPGLPGLDGSPGQTGLPGLPGLKGEPGGVAFKGGMG
LPGNPGVPGLPGDRGPMGPPGFGPQGPPGEKGIQGVSGRPGPPGVPGPKGEPGETIKEPG
VPGPPGPPGRNGEVGLPGDPGLPGQPGLSGMPGPKGDPGIPGIGLPGPSGPKGFPGTAGP
PGAPGSPGRPGLEGAPGQPGFPGPKGDPGFGVPGPPGPPGPPGLKGTQGLKGDPGFPGNP
GIPGRPGFDGTPGPKGDPGPTGPPGVVGSPGLPGIGGQGPPGQPGSPGPVGPPGLQGVPG
EKGDPGPPGFDIPGPPGDRGSPGFPGTPGLTGPPGSPGPPGRDGISGFPGVKGEMGVMGA
PGPQGPPGIPGRNGLPGSKGSDGLPGQPGPSGLAGQKGTKGEQGLPGLPGQVDMSQLGSK
GEKGEPGIPGISGATGQKGFQGLPGDQGPPGFNGQPGAPGLPGPKGEPGLSGQPGPAGPP
GQKGAMGETGLPGVPGIKGSQGIAGRPGQSGPPGFLGLKGEKGNPGLSEKGIPGPKGDTG
FPGFPGNPGSKGAPGNPGLSGLPGNPGAKGEAGLPGLPGTPGIPGPKGIDGPPGSPGLPG
SPGLPGDVGRPGSIGPPGEKGQPGQDGIPGPAGQKGEPGQPGFGRPGPPGLPGLSGQKGE
MGLPGPPGAPGLIGLKGEPGFQGFPGLQGPPGLPGLPGPSMEGPKGSPGPQGVPGRPGLQ
GPEGPRGPPGNGGFKGEKGNPGLPGQPGLPGLKGDLGPPGRQGDPGRPGLNGMKGDPGAP
GVPGFPGMKGPIGPPGATGLKGDQGPSGSPGPPGLPGPAGQTIVIKGDPGPPGPPGQPGL
KGSAGLIGPPGLPGQIGLPGDPGRDGLPGFDGPGGRKGDRGFPGQPGLQGTQGPTGPDGL
QGPPGPPGTASVAHGFLITRHSQTIDTPLCPQGTTRIYEGFSLLYVQGNERAHGQDLGTA
GSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMSMEPLTGQSIQPFISRCAV
CEAPAMVIAVHSQTIQIPSCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRS
APFIECHGRGTCNYYANSYSFWLATVEISEMFRKPQSETLKAGDLRTRISRCQVCMKRT
NT seq 5040 nt   +upstreamnt  +downstreamnt
atgtcagcgctgcggggctgcagccgcctggctgccggctgcctgctgctggggctctgg
gggctgagcgcagacgctgcggcttgccatgggtgtacatcaggatccaagtgtgactgt
agtggagtaaaaggcgaaaagggcgagagggggttcccagggttagaaggtcagcctggt
ttacctgggtttccaggacccgagggacctcctggcccaagaggcataaagggtgatgat
ggccttccagggcctactggacccaaaggaatcagaggacctccaggtctgccaggattt
ccgggaacaccaggacttcctgggttgccagggcaggatgggccaccaggacttcaaggt
atccccggatgcaatggaacaaagggagaacgtggattcccaggcagtccaggttttcca
ggtttacaaggtccttctggtcctcctggcctaccaggtatgaagggcgatcctggtgaa
ataattttgtcatcagcgtcaggccagaaaggtgaccaaggctttccaggacctccggga
ttaccaggcccacctggtccctttggcatacaaggtcctattggtccccctgggccacca
ggtttaacgggacctcgtggtctacaaggacctccagggcctaagggtaatatgggtttg
aacttccaaggacccaagggtgaaaaaggtgaccaaggccttcaaggacctcctgggcca
ccaggacaaattggggaacagaagagaccaaatgatgtagagtttcagaaaggagatcgg
ggcactccaggagagcgaggtccaccaggaccctctgggccaccaggtcctcctggtcct
tcaggtggcatgaaaggtgaaaaaggtgagcaaggagacccaggcaaaagagggaaacct
ggcaaagatggagatcctggccagcccggcagagatggtttacctggtgaccctggttta
aatggtgatccaggaagagatggtgaaaagggtctgaaaggtgaacgtggtcttcctggt
cctcctggaattatcacaggaaatggtgagcaagtgggaccaaaagggagcaaaggattt
cccggacctccaggacccaaaggcgagcgtggctctcctggcacgccagggactcctggt
ttgccagggactccaggggtttcaggaataggtccccctggtccacctggtatgcgtggg
gagcgaggacagaagggagatcaaggtctgcctggagtttccatacctggacagcctgga
cttgatggacaaccagggctgcctggacggccaggtgcccctggacctcctggaccaact
atccctcctagtgacagattatgtgagcgagggccccccggtcttccaggacgtccagga
gaccaaggttttatgggggagcgaggccagaaaggtgataagggagacacatgccttaat
tgtataggaagcagcatttctgggcctcctggtgacagggggccacccggacctccaggt
atcccaggatctcctggtttcccaggactgaaaggtgaaaaagggcttgctggcttaact
gggcctgtagggccagctggatttccaggatctccaggtgcccctggtcgtcctggtcct
aaaggagaccccggggacagccaggctttcccaggattgaaaggggaaaaaggggacact
ggtttcccaggtcctccgggtcttcctggcctagatggctctcctggacaaactggactg
ccaggtctcccgggactcaagggggaacctggtggtgttgctttcaaaggaggaatggga
cttccaggtaatccaggagtgccaggtcttcctggagacagaggacctatgggacctcct
ggttttggcccacaaggccctccaggtgaaaaaggcattcaaggcgtatcaggtcgacca
gggccaccgggtgttccaggtccgaaaggtgaacctggtgaaactattaaagaaccagga
gttccaggtccccctggtcctccaggaagaaatggtgaagtaggccttccaggtgatcct
ggtctacctggtcagcctggcttgtcgggcatgcccggccctaagggagatccaggtata
cctggaattggacttccaggcccatcaggcccaaaaggtttcccaggaacggctggcccc
ccgggagcaccaggatcccctggacgaccaggactagaaggggcaccaggacaacctggt
ttcccaggaccaaagggggaccctggatttggtgtcccaggaccacctgggccaccaggg
ccaccaggtttaaaaggaactcagggactgaaaggtgatcctggcttcccaggaaaccct
ggtattccggggcggccaggtttcgatggaactcctgggccaaaaggtgaccctggacca
actggcccacctggggtagtaggatccccagggctcccaggaattggtggtcaaggtccc
cctggacagcctggctctccaggacccgtgggcccaccaggattacaaggagttcctggt
gagaaaggagatcctggcccgcctgggtttgacatccctggtccccctggtgacagaggt
agcccaggatttccaggaacacccggtctcactgggcctccgggttcaccaggaccacca
ggacgagatggaatatcaggatttccaggtgtcaaaggtgagatgggtgtaatgggagct
ccaggtccacaaggccctcctggaattcctggcagaaatggccttccgggatctaaaggc
agtgatggattaccaggtcagccaggaccttctggattagcagggcagaaaggcacaaaa
ggtgaacaaggcctgccaggtctcccaggacaagttgatatgagccagctgggatccaaa
ggagagaagggcgagccgggcattccaggtatttctggagcaacaggccagaaaggtttt
caaggtctcccaggtgaccaagggccacctggattcaatgggcaaccaggtgcaccagga
ttaccaggccccaaaggagagccagggctttctggacaaccaggaccagctggacctcca
ggacaaaaaggtgccatgggagagacgggacttccaggtgtccctggtattaaaggttct
caaggcatagcaggacgtcctggccagtctggtcctccaggatttctaggattaaaggga
gagaaaggcaacccaggtctttcagaaaaaggaatccctggccctaagggtgacactggt
ttccctggtttcccaggtaatcctggcagcaaaggtgcacctggaaatcctggtttgtct
ggattaccaggtaatccaggtgcaaaaggagaagcaggccttcctggattaccagggaca
ccgggaattccaggaccaaaaggtattgatggacccccaggtagtcctggtcttcctgga
tcaccaggactaccaggtgatgttggccgtcctggctccataggtcctccaggggagaaa
gggcagccaggtcaggatggtattcctgggccagctggacagaagggtgaaccaggtcag
ccaggttttgggcgaccaggacctcctggactcccaggattatcagggcaaaagggtgag
atgggattacctggccctccaggtgcccctggacttataggtctgaagggtgaaccagga
ttccagggattccccgggctacaaggtccaccaggtctaccaggcctgcctgggccatct
atggaaggtccaaaaggtagtcctggtccacaaggtgtaccagggagaccaggtctgcaa
ggtccagaaggtccacggggcccccctggaaatggaggatttaaaggagaaaaaggaaac
ccaggtctgccaggccagcctggtctccctggtctgaaaggagatctaggcccacctgga
cgccagggtgatcccggtcgtccaggcctaaatggaatgaaaggtgatcccggggctcca
ggtgttccaggatttccaggtatgaagggccccattggacctccaggagcaactggtctt
aaaggtgatcaaggcccatcaggctccccaggtccaccaggcttacctggccctgctgga
caaaccattgtaataaaaggtgacccaggtcctccaggtccaccaggccagcctggactg
aaagggtcagctggattgataggcccaccaggattgccaggtcaaataggccttccaggg
gatcctgggcgagatggacttcctggatttgatggtccaggaggacgcaaaggagacaga
ggatttccaggccaaccaggcttgcaaggtacacagggacccactggtcctgatggcttg
caaggtccaccagggcctcctggaacagcttctgtcgctcatggattccttataacacga
cacagccagactatagacacaccactgtgcccacaaggaacaacaaggatatacgaagga
ttttctcttctgtatgtgcagggaaatgagcgagcccatggccaggacttaggtactgct
gggagctgtctccgccgtttcagcaccatgcccttcatgttctgtaacatcaacaatgtg
tgtaattttgcatcaagaaacgattattcctattggctgtccactccgaagccaatgcca
atgagcatggagccactgactgggcagagcatccagccatttattagccgatgtgcagtg
tgtgaagctccagcaatggttatagctgttcatagtcagaccattcaaattccatcatgt
ccacaaggctgggactctctttggattggttattctttcatgatgcacacgagtgccggt
gcagagggctctggccaggccttggcatccccaggctcctgtttggaagaattccgctca
gctcctttcattgagtgtcatggtcgtggtacttgtaattattatgccaattcatacagt
ttctggctggcaaccgtagaaatatcagaaatgtttcgtaaacctcaatcagagacattg
aaagctggagacctgagaacacgtataagtcgttgtcaagtttgcatgaagaggacgtaa

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