Pelodiscus sinensis (Chinese soft-shelled turtle): 102459670
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Entry
102459670 CDS
T02980
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102459670 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pss03019
]
102459670 (PARN)
Enzymes [BR:
pss01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102459670 (PARN)
Messenger RNA biogenesis [BR:
pss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102459670 (PARN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_R3HCC1L
R3H
RRM_Thc1
T6PP_C
RRM_1
Motif
Other DBs
NCBI-GeneID:
102459670
NCBI-ProteinID:
XP_006134194
Ensembl:
ENSPSIG00000014804
UniProt:
K7G9M5
LinkDB
All DBs
Position
16:15089192..15285411
Genome browser
AA seq
638 aa
AA seq
DB search
MEIVRSNFKDNLNKVYEAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYQKLKKH
SMDFLLFQFGLCSFKYNHTEAKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGTLSYISPNATKCPVTIPEDQKKF
IDRVVEQIEDLIQNEENSNLQLDPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYII
ISKVDEEERRRREQQKLAKEQEELSDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLSEFKELAACVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEIPFNPPEV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKSHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEENQAKRKWTEDSWKEMERKRLK
TQYTSYVPHSRYYCANSFTTTSTMGKRSMSPIQEEACSDDMEEREIQGTELDETDCYAEC
VPEGRKRAKKFKKVKEEQDPTGSITSGSTELFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagattgtcaggagcaattttaaagataacctaaataaagtgtatgaagccatcgag
gaagcagactttttggctattgatggcgaattttcaggaatcagtgatgggccatctgtt
agcacattaaccaatggctttgacacaccagaagaaaggtatcaaaaacttaaaaagcat
tccatggatttcttgctttttcagtttggcctttgtagttttaaatataaccacacagaa
gctaaatacataatgaagtcatttaacttctatatttttccaaaacccttcaatagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagtatagactttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaatcccatatttaaatcaggaagaggaaaga
cagttacgggagcagtatgatgaaaaacgttcgcagtctaatggtgcagggaccctttcg
tacatttctcctaatgccacaaagtgtcctgtgactattcctgaggatcagaaaaaattc
atcgatagagtggtggagcaaatagaagatttaatacaaaatgaagaaaacagtaatttg
cagttggatccatgcacagggtttcagaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccatgtcgaaactctggagacagagaagaaggaaagatacattatc
attagcaaggtagatgaagaagagcgcagaagaagagaacagcagaaactagcaaaagaa
caggaagaactcagcgatgcagtgggattttccagggtcattcatgccattgctaattct
ggcaaacttgttgttggacacaacatgctactggatgtcatgcacactatccaccagttt
tactgtcctctacctgaagacctaagtgagtttaaggagttagcggcatgtgtctttccc
agactattggatactaaactgatggcaagtacgcaaccttttaaggaaattattaacaac
acatcccttgcggaactggaaaaacgtttaaaagagattccattcaatcctccagaagtt
gaaagtgcagaagggtttccaagttatgacacagcttctgaacaacttcatgaagcaggc
tatgatgcttacataacaggactgtgtttcatctccatggctaactacctaggttcattt
ctcagtcctccaaaaagtcatgtatctgctagatcaaaactcattgaacctttttttaac
aagttatttcttatgagggtaatggacataccatatctcaatttggaaggaccagacttg
cagccaaaacgagaccatgttcttcatgttacatttccaaaagagtggaagactagtgat
ctttaccagcttttcagtgccttcggtaatattcaggtatcttggattgatgatacatca
gcatttgtgtcacttagccagccagagcaagtacaaatagctgtaaacaccagcaggtat
gctgaaagttataggatccagacctatgcagaatatgttgagaaaaagcatgaagagaat
caggcaaaaaggaagtggacagaagatagttggaaggagatggagagaaagcgattaaaa
acgcaatacacatcatacgttccccacagtcggtattactgtgctaacagttttacaact
accagcacaatgggaaaaagaagtatgagccctattcaagaggaagcttgctctgatgat
atggaagagagagaaatccaaggcacagagcttgatgaaacagattgctatgcagagtgt
gttccagagggaaggaagagagccaaaaagttcaaaaaagtcaaggaagagcaagatcca
acaggaagcatcacaagtgggtctacagaactctttgaagttcccgacacatggtag
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