KEGG   Pelodiscus sinensis (Chinese soft-shelled turtle): 102459947
Entry
102459947         CDS       T02980                                 
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
  KO
K12816  pre-mRNA-processing factor 17
Organism
pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pss00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102459947 (CDC40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pss03041]
    102459947 (CDC40)
Spliceosome [BR:pss03041]
 Complex C
  Other components
   Step II factors
    102459947 (CDC40)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_2nd WDR55 EIF3I WD40_WDHD1_1st WD40_Gbeta WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_RIG_2nd Beta-prop_EIPR1 ASA1 Beta-prop_TEP1_C ANAPC4_WD40 WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_WDR41 PAC11 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_NOL10_N WDR90_beta-prop_4th TRM82_WD CFAP251_N Beta-prop_ACSF4 Beta-prop_NWD2_C UCP007778 WD_LRWD1 YJR039W_M Beta-prop_Vps41 PQQ_2
Other DBs
NCBI-GeneID: 102459947
NCBI-ProteinID: XP_006123259
Ensembl: ENSPSIG00000012642
LinkDB
Position
Unknown
AA seq 578 aa
MSAAIAALASYGGSASGSDSDTEGSSRRPALVASRDAVLHLASPPPGPQALAVDAAPEVA
VKEDVETGVHLDPAIKEVQYNPTYDTMFAPEFGPENPFRTQQMAAPRNMLSGYAEPTHIN
DFMFEQQRRTFATYGYALDPSLDDHDVATKYIGSVEEAEKNQGLTVFETGQKKLEKRKKF
KENDASNIDGFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKKGRHEDDKPGEEKTIL
HVKEMYDYQGRSYLHVPQDVGVNLRSTVPPEKCYLPKKQLHVWSGHTKGVSAVRLFPLSG
HMLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNNAGTQFLSAAYDRYLKLWDT
ETGQCVSRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDVRSGEIVQEYDRHLGAV
NTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSM
DNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDADGKLNIWDWKTTK
LYSRLKAHDKVCISAVWHPHETSKVITCGWDGLIKLWD
NT seq 1737 nt   +upstreamnt  +downstreamnt
atgtcggcagctatcgccgcgctcgcctcctacggcggctccgcctcgggctccgactcg
gacaccgagggaagctcccgccgcccggcgctggtggccagccgggacgcggtgctgcac
ctcgcttcgccgccccctggcccgcaggccttggcggtggacgcggccccggaggtggct
gtgaaggaagatgtggagacgggagtccatctagatcctgctatcaaggaagttcagtac
aatcccacttacgacaccatgtttgcaccagagtttgggccagaaaatccatttaggact
cagcagatggctgcacctaggaatatgctttctggatatgcagaaccaacacatatcaat
gatttcatgtttgaacaacaaagaagaacattcgcaacttatggttatgcattagatcct
tctctagatgatcatgacgttgctactaaatatattggttctgtagaagaagctgaaaag
aatcaaggtttaactgtatttgaaacaggacaaaagaaattggaaaaaaggaagaaattc
aaagagaatgatgcatctaatattgatggcttcctgggaccatgggcaaaatatgtggat
gagaaagaagtagccaaaccttcagaagaagagcagaaagagttggatgaaataacagcg
aaaaggcagaagaaaggcaggcatgaagatgataaaccaggagaggagaaaactatctta
catgtcaaagaaatgtatgactaccaaggaagatcctatcttcatgttcctcaagatgtt
ggagttaacctccgttctacagtgcctcctgagaaatgctatctcccaaagaagcaactc
catgtatggtcaggacatacaaagggtgtcagtgcagtcaggttgtttccactctctggc
cacatgttgctgtcctgctctatggactgtaaaattaaactatgggaagtatacggtgaa
cgaagatgcttacgaacatttattgggcacagtaaagcagttcgagacatctgctttaac
aatgctggaactcagtttcttagtgcagcatatgaccggtatcttaaactctgggacact
gaaacggggcaatgtgtttcaaggttcacaaacaggaaggttccctattgtgtcaaattc
aatcctgatgaagataaacaaaatctttttgtggcaggaatgtcggataaaaaaattgta
cagtgggacgttcgaagtggggagattgtgcaggagtacgataggcatttgggagctgtc
aacactattgtgtttgtggatgagaatagacggtttgtgagtacatctgatgacaagagc
ttaagagtctgggaatgggacattcctgtagatttcaaatacattgcagagccaagtatg
cactccatgcctgcagtcaccttgtctccaaacggaaagtggctggcttgtcaatcaatg
gataatcagattttgatttttggagctcagaacagattcagattaaacaaaaagaaaatc
ttcaagggtcacatggtagcaggttatgcttgtcaagttgatttttcacctgacatgagc
tatgtgatatcgggtgatgcagatggaaaacttaacatctgggactggaagacaacaaaa
ctctacagtaggttaaaagcacatgacaaagtttgtataagtgctgtctggcatccacac
gaaacatccaaagtcatcacatgtggctgggatggtcttattaaattgtgggactga

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