Pelodiscus sinensis (Chinese soft-shelled turtle): 102462671
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Entry
102462671 CDS
T02980
Symbol
VPS13B
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13B
KO
K19526
vacuolar protein sorting-associated protein 13B
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pss04131
]
102462671 (VPS13B)
Membrane trafficking [BR:
pss04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
102462671 (VPS13B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_DH-like
VPS13_VAB
ATG2-VPS13_C
Peptidase_S48
Motif
Other DBs
NCBI-GeneID:
102462671
NCBI-ProteinID:
XP_014428787
Ensembl:
ENSPSIG00000004457
LinkDB
All DBs
Position
Unknown
AA seq
2294 aa
AA seq
DB search
MTTNLDFFLSVAQVRLLQQLVQANLIGLEPSDKVTEVSKQEQKKMDMSDGGAVETSSRYS
GAQDSGIGSDSVKIRIVQIEQHSGTSQHRIARPSRQSSIVKNLNFIPFDIFITASRISLM
SYSCTPLPKFKSVQDQKDVEKISKSSLNLPETDSDGSQETRKLSQACISSVTADDLLNSN
SSLPTGRKSGLLSLESLHASTRSSARQALGITIVRQPGRRGTGDLQLEPFLHLIVSQPSV
LLSCHHRKQRVEISVFDAVLKGVTSDYKCTDPGKTLPEALDYCKVWLQTVAGEIDAKSGI
PPSLVTLQIKDFLNGPADINVAISKPLKANLSFVKLDQINHFLRKIIRTNDYDTSKEAAA
SADSIPIKDGISAPQCSSRKEFLPAISANGEQMASVQENLWRVLSCFQKISIHTAQMVVS
VETMPHLKKPCLLASLSNLRGNLNVRSGHKTTGVIHGSSFVLEINDFLLKTSLKGRSRAL
IGPFCCSVNVEAKWCKHSGNPGPEQSVPKIHLDLRGGLIQVFWGQEHLNCLVLLHELLQE
YLTEQGKREVLISDLTCQIQSPMEKNQLSKTEHTSDDLRTGLFQYIQDAEAQKLPSAYEV
VFYNETEDSPGIMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWD
ELQKSFVAFREFSLSESKVCELQLPSVSLVNDQKELVASDLWRIVLNSSQNGPDDQSSES
ESGSQSACDQLVTPTALAACTRVDSCFTAWFVPSLGVSVQFAHLELHLCHHLDQLGTAPP
RFLQPFTSDKNVPSELEYMVVSFKEPHIYLRQWSDESVFKEIQFSAWADCKLLECRNVTM
QNVVKPFKICGQIAISSNTAEKLLDCTVMVDPIFVNFGQYAVHSMNTALQAWQQNQCPEA
EELVFSHFVICNDTQETLRFGQVDTDENVLLASLHCHQYSWRSHKSPQLLHICIEGWGNW
RWSEPFSVDNAGIFIRTIQYKGRTASLIIKIQQLSGVQKQIIICGRQMVCSYLADSIELK
VVQHYIGQDGQAVIKEHFDCLAAKQKLPSYVLEDDELTELSVKAKGDEDWSRDVCLSSKN
TEYSTVIQVPSSNSSIIYVWCTILTLEPSTQVQQRIIVFSPLFIMRSHLPDPIIIHLEKR
SLGLRETQMIPGKGQEKSLQNIEPDLTHHLTFQAREEDDPSECAVPISTALIKQIATKSH
ASGTVNQILSEFYGINSSPQPVWPYNRKDSESNEQLTQWDSPMRVKLSVWKPCIKTLLIE
LLPWALLINQSKWDLWLFEGEKIVLQIPAGKTIIPPNFQEAFQIGIYWANTNTVHKSVAI
KLVHNVTSPKWKDADNGEMVTLDEEGFVEAEIKLGAFPGHKKLCQFCISSMVQHGIQILQ
IEDKTTVINNTSYHIYCIPQLSVLRPRSGEEYLHIPDSTAFRICPAGEPPTEKLSSVPCW
DLMSDISQSTSEVSLLKKHILLSFSPIVCADSLQCWSLPAVIKQEFPRQSVSVPIGVCNE
SGFCTRAIALTYQEHLGVTYLTLTEDPSPRIIIHNRCSVSLILKENIKDTPKFEVYCKKI
PAECSVHHELYHQVSSYPDCKTKDLLPSILLKVMSSDELTHEWSDFVDINNQGTQIVFLT
GFGCVYVDIAHRCGTIIITLAPEGRPGPVLINLNRTPEQSVIFKMFISQASLAMFDEITN
HKMSSELLRLTVDNVYLKMAPVDSYLRSLSHEFQGEISEGLPQFYGLQIYCGDLQLDNQL
YNKSNFHFAVLLCQGEKNETIEWSKVNNLILSKKDLEEYKENCFIKLCITLSEEQNFLFC
VNDLSFELKPARLYVEDTFVYYIKTLFDTYLPDNKVIGHCIKNSTITQILPEQVRQHAKA
LVNPVKLRKLAIQPVNLLVSIHASLKLYIASDHTPLSFSEFERGPIYTTARQLIHVLAMH
YAAGALFRAGWVVGSLEILGSPASLVRSIGNGIADFFRLPYEGLTRGPGAFVSGVSRGTT
SFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPENLGEGLRQGLSRL
GISLLGAIAGIVDQPMQNFQKISEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVS
QTGYGILHGAGLSQLPKQRXTNSHIKYVWKMLQSLGRPEVHMALDVIIVSGSGQEHEGCL
LLTSEVLFVVSVSEDTQQQAFPVTEIECVEDHQRKNLLKVQLKQERVPCDLEVDGVRERL
SEQQYNRLVDFVTKASYHLVPSYFSGQTTSQVVAAEPLPSTIKTYQYLVDPNFAQVFISK
FTMVKNKALRKGFN
NT seq
6885 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaaacctggacttcttcctcagcgtagctcaagtacgacttctacagcagcta
gtacaagccaatttgattggactagagccttctgacaaggtcactgaggtttccaaacaa
gaacagaaaaaaatggatatgtctgatggaggagcagtcgaaacatcttcacgttatagt
ggtgcccaagatagtggcattggcagtgatagtgttaaaatcagaatagttcaaatagaa
caacatagtggcactagccaacaccgcattgcccgtccttcccgacagtcttcgattgtg
aagaacctgaacttcattccctttgacatttttattactgcaagccgaatctccttgatg
tcttattcatgtactcctttacctaaatttaaatcagtgcaagatcagaaagatgttgag
aaaataagtaaaagctcactaaaccttccagaaacagattcagatggtagccaagaaacc
aggaagcttagtcaggcatgtatttcatcagtaactgcagatgatctcttgaacagtaac
agttctttgcccactgggagaaaatcaggtctactatcactagaaagtcttcatgcttcc
acaaggtcatctgctcgacaagcccttggtatcactattgttcgacagcctggtcgcaga
ggaactggtgacctccagctagaaccttttctgcatcttattgtatcccagccttctgtg
ctcttgagctgtcaccacaggaaacaaagagtggaaatatcagtgtttgatgctgtgctt
aaaggagtaacctcagattacaagtgtacagatcctggaaagacacttccagaagctctt
gattattgcaaggtttggctacagacagtagcaggagagatagatgcgaaaagtggcatt
ccaccttctcttgtcacactgcaaattaaagactttctcaatgggccagctgacataaat
gtggctatttcaaagcctttgaaagcaaacctgagctttgtcaaacttgaccaaataaat
catttcctgaggaagataatacggacaaatgactatgacactagtaaggaggctgctgct
tcagctgatagcattccaatcaaggatggcatatcagcaccccaatgttccagtagaaag
gaatttttgcctgcaataagtgctaatggagagcaaatggcttcagtccaagaaaacttg
tggagagttctttcctgctttcaaaagatttccattcatactgctcaaatggttgtttct
gtggaaaccatgccacacctgaaaaaaccttgcctattagcatctctatcaaaccttagg
ggaaatctgaacgtcagatctggacataaaacaacaggtgtaattcatggatcatctttt
gttcttgaaataaatgattttctccttaaaacaagtctcaaaggaagaagcagagctctt
ataggccccttctgctgttctgtcaatgtggaagctaagtggtgtaagcacagtggtaat
cctggtccagagcaatctgttcctaaaattcatcttgacttaagaggagggctgatacag
gtcttctggggacaagaacatttgaattgtttagttcttcttcatgaacttctgcaagag
taccttacggaacaaggcaagagggaggtgctgatctctgatctaacatgccagattcag
tctcctatggaaaagaatcaactctcaaaaactgagcatacctcagatgatctgagaaca
ggcctcttccagtacatacaagatgcagaggcgcagaagctgccgagtgcctatgaagtt
gtgttttacaatgaaacagaggatagtccaggaataatgttatggagatatccagaaccc
agagtgcttacccttgtaagaataactcctgttccttttaatacaaccgaagatccagat
attagcactgcagaccttggagatgttcttcaggttccttgtagcttggagtactgggat
gagctccagaaatcatttgttgcattccgggagttcagtctatcagaaagcaaagtttgt
gagctacagctgcccagtgtcagccttgtgaatgatcagaaagagcttgtagcctcagac
ctttggaggattgtcctgaacagcagtcagaatggacctgatgaccaaagctctgaaagt
gaatctggctcacaaagtgcatgtgatcagcttgtaactcctacagcattagcagcctgt
accagagttgactcctgttttactgcttggtttgtgccttcacttggtgtttcagtccaa
tttgctcatttggaactccatctctgccatcatcttgatcagctgggcacagcaccaccc
aggttccttcaaccatttacctctgataaaaatgttccatctgaactagaatacatggta
gtttccttcaaagagccccacatatatctccggcagtggagtgatgaatcagtcttcaag
gagatccagttttctgcatgggctgactgtaaacttttggagtgtcgaaatgttactatg
cagaatgtcgtgaagcctttcaaaatctgtgggcagattgccatttctagtaatacagca
gaaaagttactggactgcactgtcatggtggaccctattttcgtaaactttgggcaatat
gcagttcattcgatgaatacagcgcttcaagcttggcaacagaaccaatgcccggaggca
gaggagttggtctttagccattttgtgatctgtaatgacacacaggagacactgcggttt
ggccaggtggatactgacgaaaatgttttgctggctagtctccactgtcaccagtacagc
tggcgctctcacaagtccccacagctactccacatatgcattgaaggttggggaaactgg
cgctggtctgagccattcagcgtggacaatgcaggaatctttatcagaaccattcagtac
aaaggcaggacagcatcacttatcatcaagattcaacagctcagtggagtgcaaaaacaa
ataataatctgtggaagacagatggtctgtagttatctggctgacagcatcgaattgaaa
gtggttcagcactacattggccaagacgggcaggcagttattaaagaacattttgactgc
cttgcagccaaacagaagctgccttcctatgtcctagaagatgatgagctgacggaattg
agtgtgaaagctaaaggagatgaagattggtcaagagatgtatgtctcagttccaaaaac
acagaatatagcacagtcattcaggtaccatcttcaaacagttcaattatttacgtgtgg
tgcacaattttgacattagaacccagcactcaagtacaacaacgaataattgttttcagc
cctctttttatcatgaggagtcatcttccagatccaattatcatacatttggagaaaaga
agtctgggattgcgtgaaacacaaatgattccaggaaaagggcaggagaaatcattgcaa
aatatagagcctgatcttacccatcacttaacatttcaagctagggaagaggatgatcct
tcagaatgtgcagttcctatctcaacagcacttattaaacagatagctactaaatcccat
gcaagtggcactgtgaatcagatactgtctgagttttatgggattaatagctctcctcag
cctgtgtggccatataatagaaaggattcggagagtaacgaacagctcacgcagtgggat
agcccaatgcgggtgaagctttcagtgtggaagccgtgtattaaaaccctactgatagaa
cttctgccctgggcactgcttatcaatcagtctaaatgggatctatggctatttgaagga
gagaagatagttcttcagatacctgctgggaaaacaattatacctccaaatttccaggaa
gcttttcaaattggaatatactgggcaaacactaacactgtgcacaaatcagtggcgatc
aaactagttcataatgtaacatctccaaaatggaaggatgcagacaacggggaaatggta
acactggatgaagaagggtttgttgaagctgaaataaaacttggtgccttcccaggtcat
aaaaagttgtgccagttctgcatttcatctatggttcagcatggcattcaaattctacag
attgaagataagacaactgtaatcaacaatacatcataccatatctattgtataccacag
ctgtctgttttaaggcctcggtctggagaggagtatttacacataccagatagtacagca
ttcagaatctgcccagctggggaaccacctactgaaaaattgagctctgttccttgttgg
gacctgatgtcagacatcagtcagtcaacatcagaagtgtccctcctgaaaaagcacata
ttgctaagtttcagtccaattgtgtgtgctgacagtttgcagtgctggagcctgccagct
gtgattaaacaagaatttcctagacagagtgtgtcagtacccattggtgtttgtaatgaa
agtggattttgtaccagagccatagcactgacttatcaagagcatcttggggtgacatac
ttaactcttacggaagaccctagtcctcgcataattatccacaacaggtgttctgtctca
ttgattttaaaggagaacatcaaagatacaccaaaatttgaagtttattgcaagaaaatt
ccggctgaatgttctgttcatcatgagctttatcatcaagtctccagttacccagattgc
aaaaccaaagacttattgcccagcattcttctgaaagtgatgtcatcagatgaactaaca
catgaatggagtgattttgtggatattaataatcaaggcacacagattgtattcctaact
ggctttggctgtgtttatgtggacattgctcatcggtgtggtacaataataataactttg
gccccagaaggaagaccaggacctgtcctgatcaacctgaacagaactccggagcaatcc
gttatatttaaaatgttcatcagccaggcaagccttgcaatgtttgatgaaatcactaat
cacaaaatgtcttctgaacttctgcggctcaccgtggacaatgtttaccttaaaatggca
ccagtagacagctacttgagatcactgtctcatgaattccagggagagatctctgaaggt
cttcctcagttttatggtctccaaatatattgtggagacttgcaattggacaatcagctg
tataataaatccaatttccactttgcagtcctgctgtgccagggagagaaaaatgaaacc
attgagtggtccaaagtgaacaacctcattttatccaaaaaagacttggaagaatataag
gaaaactgtttcataaaactttgcattactttatcagaggaacagaattttttattttgt
gttaatgacctcagcttcgaactgaaaccagccaggctatatgtggaagacacatttgtt
tattacattaagaccttatttgatacatatcttccagacaacaaagtgattggtcattgc
ataaaaaactcaactattactcaaatacttcctgaacaagtgagacagcatgctaaagct
ttagtcaacccagtaaagttaaggaagttagcgatacaaccagttaacctcttggtcagt
atccatgcttcactaaagctgtatatagcttcagatcacactcctctctccttctctgag
tttgaacgaggccccatctacaccactgccagacagctcatccatgttttggccatgcat
tatgctgcgggggcactattcagagcaggctgggttgtcggatctttggaaattcttgga
agcccagctagcttagtaagaagtatagggaatggcatagctgacttctttagactcccg
tatgaggggctgaccaggggcccaggagcatttgtcagtggagtttccagaggaacaaca
tcatttgttaaacacatttccaaaggtacactgacatctattactaatcttgcaactagt
cttgctcggaatatggatcggctgtcgctggatgaggagcattacaatagacaagaagaa
tggagaaggcagcttccagagaatttgggagaaggactgagacaggggctttcccgctta
ggcatcagccttttaggtgcaattgctggtattgtagatcaaccaatgcagaattttcag
aaaatatctgaggcccaagcttcagcagggcacaaagccaaaggtgttatctctggtgta
ggaaagggaattatgggagtgtttactaagccaattggaggagcagctgaacttgtctcc
caaacgggctatggtattttgcatggagctggactttctcagcttcccaaacagcgcnnt
acaaacagccacataaaatatgtctggaaaatgcttcagtctctaggaaggccagaggtc
catatggcactggatgtgataattgtgagtggatcaggacaagaacatgaaggatgcttg
ctacttacatcagaagtgctatttgtggtcagtgtcagtgaagacacacaacagcaggca
ttccctgtgactgaaattgaatgtgtagaagaccatcaacgaaaaaacctgctgaaggtg
cagctcaaacaagaaagagtgccttgtgatttggaggtggatggagttagagaaagactc
tccgaacaacaatataatcgacttgtggactttgtcacaaaagcatcctaccaccttgtt
ccaagctacttttctggacaaactacatcccaagttgtagctgcagagccccttccaagt
acaattaagacatatcagtacctagttgatccaaattttgctcaggtattcattagtaaa
ttcactatggtaaaaaataaagccttgcggaagggatttaattaa
DBGET
integrated database retrieval system
