Pelodiscus sinensis (Chinese soft-shelled turtle): 102463710
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Entry
102463710 CDS
T02980
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pss03016
]
102463710 (RTCB)
Enzymes [BR:
pss01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
102463710 (RTCB)
Transfer RNA biogenesis [BR:
pss03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102463710 (RTCB)
Prokaryotic type
tRNA splicing ligases
102463710 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
102463710
NCBI-ProteinID:
XP_014436505
Ensembl:
ENSPSIG00000011690
LinkDB
All DBs
Position
Unknown
AA seq
493 aa
AA seq
DB search
MVCLFAGLSIGIVNFLAQSVEGVFYVNEPLEKLMFEELRNACRGGGAGGFLPAMKQIGNV
AALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNMD
ESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEH
CEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKG
QVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA
AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV
HRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGR
ALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISK
KAIKLRPIAVIKG
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggtctgtttgtttgcaggattgagcattgggattgtaaacttcttggcacaaagtgtg
gaaggagtattttatgtaaatgagccactagagaaattaatgtttgaggagttacgaaat
gcctgcagaggtggcggtgctggtggattcttacctgctatgaaacagattgggaatgtg
gctgcactgcctggcattattcataggtctattgggcttcccgatgtacattctggttat
gggtttgccattggtaacatggcagcatttgacatgagtgacccagaagcagtggtgtca
ccaggtggtgtcgggtttgacatcaactgtggtgtccgattgctgcgtacgaacatggat
gaaagtgatgtccagcctgtgaaggaacagcttgcgcaggccatgtttgaccatattcca
gttggtgtgggctccaaaggtgtcatccccatgaacgccaaggacttggaggaggcactg
gaaatgggtgttgactggtctctcagggaaggttatgcctgggcagaggacaaggagcac
tgtgaagaatatggaaggatgctgcaggctgatcccaataaggtctcctcaagagctaag
aaaagaggtttgcctcagcttgggaccctgggagccggaaaccattatgctgagatccag
gtggtagatgacatttataacgagtatgctgccaggaagatgggcattgatcacaagggc
caggtgtgtgtaatgattcacagtggcagcagaggcctgggtcatcaagtagctacagat
gctttagttgctatggagaaagccatgaaacgagacaagatcatagttaatgatcgccag
ttggcatgtgccagaattgcatcccctgagggacaagactatctaaagggaatggcagcg
gctgggaactatgcatgggtcaaccgttcctccatgactttcctaaccagacaggccttt
gctaaagtcttcaacacaacccctgatgacttagatcttcatgtgatctatgatgtgtct
cataacattgctaaagtagagcagcatgtggtggatggaaaagaaagaaccctcctggtg
cacagaaaggggtcgaccagggctttccctcctcatcatcctctcattgccgtcgattac
caactgactggacagccggtactgattggtgggacaatgggaacctgtagctatgttctt
actggcactgaacaaggcatgactgagacctttggaaccacgtgccatggagctggtcgt
gcattgtcccgagccaaatctcgacgaaacttggacttccaggatgtgctagacaagctg
gccgacatggggattgccatccgtgttgcttcccccaagctggtcatggaagaagcacca
gaatcctataagaatgtgacagatgtggttaacacctgccatgctgctggcatcagtaag
aaagctattaaattgagacctattgctgttattaaaggctag
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