Pseudoxanthomonas sp. SE1: OY559_04425
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Entry
OY559_04425 CDS
T10619
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
psse Pseudoxanthomonas sp. SE1
Pathway
psse02020
Two-component system
psse02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psse00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OY559_04425
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OY559_04425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psse03021
]
OY559_04425
Transcription machinery [BR:
psse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OY559_04425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_AsnC-type
HTH_24
HTH_Tnp_ISL3
HTH_Crp_2
LacI
HTH_23
Sigma70_r4
MarR_2
HTH_31
HTH_AraC
T2SSK_1st
HTH_38
TetR_N
Motif
Other DBs
NCBI-ProteinID:
WFC42776
LinkDB
All DBs
Position
complement(976356..977789)
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AA seq
477 aa
AA seq
DB search
MKPRLQTSLGQHLVMTPQLRQAIRLLQMSTAELEIELTEAVETNPLLDWTEADEEPAPTQ
GAEDDRPPEESPREAERDASDDRDDWSPDEGPWASSGGGSFDDEDGGSPAERVAEADTLH
GHLLWQLHLSHLSPRDRRIGATLIDALEEDGYLREPLSGIVQALRPDIEANEDDVLVVLH
QVQRFDPVGVAARTLGECLHLQLAVLSDDTPGKALALQIADTALERLPRSGVAGIAQEMK
RPVAEVDEAVQLLRTLDPKPGAQVGDLSHDTYVVPDCVVWRQRGVWRAALAGSTLPRIAI
HRGYEQMIRQCGDSDAGYLKAQLQEARWLLKSVEARGETLLKVMRCLLHQQAGFLEFGEQ
ALRPLTLRDVAEEVGLHESTVSRAIARKYVRTPRGTLPMRAFFASGIDTEGGGEASSTAI
QAMIRRLVDAENPRKPLSDAKLADLLKASGIPVARRTVAKYREALNILSSHERVRIA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagccacgcctgcagacatcgctgggacaacatctggtcatgacgccccagttgcgt
caggccatccggctgttgcagatgtccaccgccgagctcgagatcgagttgaccgaggcc
gtggagaccaaccccctgctcgactggaccgaggccgacgaagaacccgcgcccacgcag
ggcgccgaggacgaccgcccgcccgaagaaagccccagggaagccgaacgcgacgcctcc
gacgatcgcgacgactggtcgccggatgaaggcccgtgggcctcctcgggcggtggctcg
ttcgacgacgaagacggcggcagtccggccgaacgcgtggccgaagccgatacgctgcac
ggccacctgctgtggcaactgcacctgtcgcatctctccccacgcgaccgccgcatcggt
gccacgctgatcgatgcgttggaagaagacggctacctgcgcgaaccgctgtccggcatc
gtgcaggcgctgcgtcctgacatcgaggcgaacgaggacgatgtcctcgtcgtcctgcac
caggtgcagcgcttcgacccggtgggcgtggcagcccggacgctcggcgaatgcctgcat
ctgcaattggccgtgctgagcgacgacacgccgggcaaggcgctggccctgcagatcgcc
gacacggccctggagcgcctgccgcgtagtggcgtggccggcatcgcccaggagatgaag
cgaccggtcgccgaggtggacgaggccgtgcaattgttgcgcacgctcgatccaaaaccc
ggggcgcaggtcggcgacctctcgcatgacacctacgtggtgccggactgcgtggtctgg
cgccagcggggcgtctggcgcgccgcgctcgcgggcagcacgctgccgcgcatcgcgatc
catcgcggttacgaacagatgatccggcaatgcggcgacagcgatgccggctacctgaag
gcgcaactgcaggaagcccgctggctgctgaaaagcgtggaagcacgcggcgagaccctg
ctcaaggtcatgcgctgcctgctgcaccagcaggccggcttcctggaattcggcgagcag
gcactgcgcccactgacgctgcgcgacgtggccgaagaagtgggcctgcacgaatccacc
gtgtcgcgcgccatcgcgcgcaagtatgtacgcaccccgcgcggcaccctgcccatgcgc
gccttcttcgcctccggcatcgacacggaaggcggcggcgaagcatccagcaccgccatc
caggcgatgatccgccggctggtcgatgccgagaatccccgcaagccgctgtccgacgca
aaactcgcggacctgctcaaggcatccggcattccggtggcacggcgcaccgtggccaag
taccgcgaagcactgaacatcctctcttcgcacgagcgcgtgcgcatcgcctga
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