Pseudoxanthomonas sp. SE1: OY559_05710
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Entry
OY559_05710 CDS
T10619
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psse Pseudoxanthomonas sp. SE1
Pathway
psse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OY559_05710 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psse03019
]
OY559_05710 (rnr)
03016 Transfer RNA biogenesis [BR:
psse03016
]
OY559_05710 (rnr)
Enzymes [BR:
psse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OY559_05710 (rnr)
Messenger RNA biogenesis [BR:
psse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OY559_05710 (rnr)
Transfer RNA biogenesis [BR:
psse03016
]
Prokaryotic type
tRNA degradation factors
OY559_05710 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WFC43006
LinkDB
All DBs
Position
1251727..1254234
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AA seq
835 aa
AA seq
DB search
MTKKTPRSGGKTPAGKGSKPGGAPGSRNAGKAAPPGKSGKSGKPAKKNLPPWMPDVPARA
PSRTHAGGAPAARRNPGSGSRTGGRFVDPHAQREAQRYEQPIASREAILGFLEAAEGPQT
AEEIAGPLGLDAPERFDALSKRLGAMVRDGQLVQNRRGGFAPVQQTDLISGTVIANPDGF
GFLRPDAGGDDLFLPPYEMRKVMHGDRALANVTGIDRRGRREGSIARVLERGVTRLIGRF
GFEVGIAYVAPDDKRIQRNVQIPQDATGGARDGQLVVVELTQAPDTRRPPIGKVIAVLGD
SLTPSLVVEAAIHGHNLPHEFPQEVLDEATAVPLVIEPSMIGDRVDLRDMPLVTIDGADA
KDFDDAVYCESNRQGLRMKNRSGYRLVVAIADVSHYVRPGTPLDDEAQKRATSVYFPGFV
VPMLPETLSNGICSLNPKVDRMCFVCDMQVNSEGEVTQSKFYEAVMRSHARLTYDQVWKA
VGEGDAEARQSIGTLLPQVERLHELYGLLAKAREKRGAIEFETSEVRFELDNRGEVTQAG
MLQRNDAHKLIEECMIAANVEAARFLLGARIPAPYRVHDRPPESKYADLLEFLKEFKLSL
PAWSKVQPRDFTQLLKKIRERPDVALLESVVLRSQSLAVYSPDNAGHFGLALEAYAHFTS
PIRRYPDLLVHRAIKYALTKGKPEKFLYSGHEMAALSLQCSERARRADEAEREVDERYRA
AWMEQHVGGQFDGVISGVTSFGLFVELDQSKVNGLVHVTQLPQDYYHFDPLRKTLSGERR
GMSFRLGDRVRIIVLKASLEERKIDFRLVDDKAKDGGTPSPQPRGQPAKRRKQKY
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagaagacaccacgcagcggcggcaagacgcccgccggaaaaggaagcaagccg
ggcggcgcgccaggttcccgcaacgccggcaaggcggcccccccgggcaagtctggcaag
tctggcaagccggccaagaagaatctcccgccctggatgcctgatgtgcccgcgcgggcg
ccttcccgcacgcatgccggcggtgcacccgccgcccgccggaacccggggtccgggtca
cgcacgggcggtcgtttcgtcgacccgcatgcgcaacgcgaagcgcagcgctatgaacag
cctatcgccagtcgcgaggccatcctcggtttcctcgaagccgcggagggtccgcagacg
gcggaggaaatcgccggtccgctgggcctggacgcaccagagcgtttcgatgcgctgtcc
aagcgcctgggggcgatggtccgcgatggccagctcgtgcagaaccggcgcggaggcttt
gcgccggtgcagcagaccgacctcatctccggcacggtgatcgccaatccggatggcttc
ggtttcctgcgtccggatgcgggcggcgacgacctgttcctgccgccctatgaaatgcgc
aaggtcatgcatggcgaccgcgcgctggccaatgtcaccggcatcgatcgccgcggtcgt
cgcgaaggcagcatcgcgcgcgtgctggagcgtggcgtcacccgcctgatcgggcggttc
ggtttcgaagtgggcatcgcctacgtggcgccggacgacaagcgtatccagcgcaatgtc
cagatcccgcaggatgcgaccggtggcgcgcgcgacggccagctcgtcgtggtcgaactg
acccaggcgccggacacgcggcgcccgcccatcggcaaggtcatcgccgtgctcggcgac
agcctgacgccatcgctggtggtcgaggccgcgatccacggccacaacctgccgcacgag
ttcccgcaggaagtgctggacgaggccaccgcggtgccgctggtgatcgaaccttcgatg
atcggcgaccgcgtcgacctgcgcgacatgccgctggtgaccatcgacggcgccgatgcg
aaggacttcgacgatgcggtgtattgcgaaagcaatcgccagggcctgcgcatgaagaac
cgcagcggctaccgtctggtcgtggccatcgccgatgtctcgcactacgtgcgccccggc
acgccgctggatgatgaggcgcagaagcgcgcgacgtcggtgtacttccccggtttcgtg
gtgcccatgctgccggagacgttgtccaacggcatatgctcgctgaatccgaaagtggac
cgcatgtgtttcgtctgcgacatgcaggtcaacagcgagggcgaagtcacacaatcgaag
ttctacgaggcggtgatgcgctcgcacgcacgcctgacctacgaccaggtgtggaaggcg
gtgggtgagggcgacgccgaggcgcgccagtccatcggtacgctgctgccgcaggtcgaa
cgcctgcatgaactgtatggcctgctggccaaggcgcgcgaaaagcgcggtgcgatcgag
ttcgagacgtccgaagtccgcttcgaactggacaaccgcggggaagtcacccaggccggc
atgttgcagcggaacgatgcgcacaagctgatcgaggaatgcatgatcgcggccaacgtg
gaggccgcccggttcctgctgggcgcgcgcattcccgcgccgtaccgcgtgcacgaccgg
ccaccggaatccaagtacgcggatctgctcgagttcctcaaggaattcaagttgagcctg
ccggcctggagcaaggtgcagccacgggatttcacccagttactgaagaagatccgcgag
cgtcccgacgtggccctgctggaatcggtggtgctgcgcagccagagcctggcggtctac
tcgccggacaacgcaggccacttcggcctggcgctggaagcctacgcgcatttcacttcg
ccgatccgccggtaccccgacctgctggtgcaccgtgccatcaagtacgcgctgaccaag
ggcaagccggagaaattcctgtattccgggcacgagatggcggcgctttcgctgcagtgt
tcggaacgtgcgcgccgcgccgacgaagccgagcgcgaggtcgacgaacgctaccgcgcg
gcgtggatggagcagcatgtcggcggccagttcgatggcgtgatcagtggcgtcaccagc
ttcggcctgttcgtggaactggaccagtccaaggtcaacggcctggtccacgtgacccag
ttgccgcaggactactaccacttcgatccgctgcgcaagaccttgtcgggcgagcgccgc
ggcatgtcgttccgactgggcgaccgcgtccgcatcatcgtgctgaaggccagcctggag
gaacgcaagatcgacttccgtctggtcgacgacaaggcgaaagacggtggcacgccctcg
ccccagccgcgtgggcaaccggccaagcgcaggaagcagaagtactga
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