Pseudoxanthomonas sp. SE1: OY559_12570
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Entry
OY559_12570 CDS
T10619
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psse Pseudoxanthomonas sp. SE1
Pathway
psse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OY559_12570 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psse03019
]
OY559_12570 (pnp)
03016 Transfer RNA biogenesis [BR:
psse03016
]
OY559_12570 (pnp)
Enzymes [BR:
psse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OY559_12570 (pnp)
Messenger RNA biogenesis [BR:
psse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OY559_12570 (pnp)
Transfer RNA biogenesis [BR:
psse03016
]
Prokaryotic type
tRNA degradation factors
OY559_12570 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF7680
KH_KhpA-B
KH_NusA_2nd
Phage_tube
AATF-Che1
KH_Vigilin
Motif
Other DBs
NCBI-ProteinID:
WFC40648
LinkDB
All DBs
Position
complement(2660191..2662299)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHQVTLETGEIARQAGGAVVVKFDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPLRPLFPEEFRNEVQVIATVMSLN
PEIDGDIPALIGASAAVALTGAPFNGPIGAAKVGYINGEYVLNPTVSELKDSKLELVVAG
TSNAVLMVESEAAELSEDVMLGAVMFGHREMQKVINIINELVTEAGTKNWEWSAPAKNEA
MISALKEAVGTQLESAFQVRDKLQRRDAIAAIKKDVMQQLAGRAEADGWSAGALSKEFGE
LEYQTMRGSVLATKVRIDGRALDTVRPISSKVSVLPRVHGSSLFTRGETQAIVAVTLGTA
RDGQVIDAVGGEWKDHFLFHYNFPPFSVGEAGRMMGPKRREIGHGRLAKRGVLAVMPTME
AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTANGVSALQMDIKIEGITEEIMKQALTQAKAGRLHILGEMAH
AMTSPRQELSEFAPRLITIKIHPDKIREVIGKGGSVIQAITKETGTQIDIQDDGTITIAS
VNGAAGQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISNDRV
EKVSDALKEGDVVKVKVLEVDKQGRIRLSIKAVEEGEGVSAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcaccaggtcaccctggaaaccggc
gaaatcgcccgccaggccggcggcgccgtcgtcgtcaagttcgatgacaccgtgctgctg
gttaccgccgtggcggcgaagtcggcccgcgaaggccaggacttcttccccctgacggtc
gactaccaggagaagttctacgccggcggccgcatccccggtggcttcttcaagcgcgaa
ggtcgcgcgaccgagaaggagacgctgatctcccgcctgatcgatcgcccgctgcgcccg
ctgttcccggaagaattccgcaatgaagtgcaggtcatcgccacggtgatgtcgctgaac
ccggaaatcgacggcgacatcccggcgctgatcggcgcctccgcggccgtcgccctgacc
ggcgcgccgttcaacggcccgatcggtgccgccaaggtcggctacatcaacggcgaatac
gtgttgaacccgaccgtcagcgaactgaaggactccaagctggagctcgtcgtcgccggt
acgtccaacgccgtgctgatggtcgaatccgaagccgccgagctgtccgaagacgtgatg
ctgggcgcggtgatgttcggccaccgcgaaatgcagaaggtcatcaacatcatcaacgag
ctggtcaccgaagccggtaccaagaactgggagtggtctgcgccggccaagaacgaggcg
atgatctccgcgctgaaggaagccgtgggcacccagctcgagtccgccttccaggtgcgc
gacaagctgcagcgccgcgacgccatcgccgccatcaagaaggacgtgatgcagcagctg
gctggccgtgccgaagccgatggctggagcgccggcgcgctgtcgaaggaattcggcgag
ctggaataccagaccatgcgcggttccgtgctggccaccaaggtccgcatcgacggtcgt
gcgctggacaccgtccgcccgatctcctccaaggtcagcgtgctgccgcgcgtgcacggc
tcctcgctgttcacccgtggtgagacgcaggcgatcgtcgccgtcaccctcggcaccgcg
cgcgatggccaggtgatcgacgccgtcggcggcgagtggaaggaccacttcctgttccac
tacaacttccccccgttctcggtgggcgaagccggccgcatgatgggcccgaagcgtcgc
gaaatcggccacggccgccttgccaagcgcggcgtgctcgccgtgatgccgacgatggaa
gccttcccgtacacgatccgcgtggtctcggaaatcaccgagtcgaacggctcctcctcg
atggcctcggtctgcggcagctcgctggcgctgatggatgccggcgtgccgatcaaggcg
ccggtggccggcatcgcgatgggcctggtgaaggaaggcaacgacttcgtcgtgctgagc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtcgccggtaccgcc
aacggcgtgtccgcgctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcgctgacgcaggcgaaggccggccggttgcacatcctgggcgaaatggcccat
gcgatgacctcgccgcgccaggagctgagcgagttcgcgccgcgcctgatcaccatcaag
atccaccccgacaagatccgcgaagtgatcggcaagggcggttcggtgatccaggccatc
accaaggaaaccggcacgcagatcgacatccaggacgacggcaccatcaccatcgcctcg
gtcaacggcgccgccggccaggccgccaaggcccgcatcgagcagatcacctccgacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtgtcgcagatctccaacgaccgcgtc
gagaaggtcagcgacgcgctgaaggaaggcgacgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatcaaggccgtggaagaaggcgagggcgtgtcg
gccgagtaa
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integrated database retrieval system
