Pseudoxanthomonas sp. SE1: OY559_14820
Help
Entry
OY559_14820 CDS
T10619
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psse Pseudoxanthomonas sp. SE1
Pathway
psse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OY559_14820 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psse03021
]
OY559_14820 (rpoC)
03400 DNA repair and recombination proteins [BR:
psse03400
]
OY559_14820 (rpoC)
Enzymes [BR:
psse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OY559_14820 (rpoC)
Transcription machinery [BR:
psse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OY559_14820 (rpoC)
DNA repair and recombination proteins [BR:
psse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OY559_14820 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WFC41064
LinkDB
All DBs
Position
complement(3132206..3136438)
Genome browser
AA seq
1410 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCSA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTSLERRQLLTEEQFMQARQEHGDDFDAAM
GAEAVYDLLRTIDLQAEMVNLREEIASTGSETKLKRLTKRIKLMEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEADVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSSNNILSPANGEPIIVPSQDVVLGLYYMTRALENKKGEGMAFANIAEVKRAYDNR
AVELHAKVKVRISGTVIDEEGGRSKQTSIVDTTIGRALLAEILPEGLPFALVNTELNKKA
ISRLINSSYRMLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMLIPAEKKGILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMETIGTDKVQNAKGETINEKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTSEGLMMTPIVEGGDVVEPLRDRVL
GRIVAEDVFLPGNDEDPIVTRNTLLDEAWVQKLEDAGVQALKVRSTITCESDFGVCAHCY
GRDLARGHIVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSIK
FNNLKFVEHANGSLVAVSRSGELSVLDGHGRERERYKLPYGATINVKDGDQITAGQAVAN
WDPHNHPIVSEVAGFVRFVDFVDGVTVIEKTDDLTGLASREITDPKRRGSQGKDLRPIVR
IVDKDGKDLSIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVTKVPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKFRQIIVFE
GEHVAKGETIVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDAGNSKFLAGEQVEKQRFIEENAKLLARNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHNQRRRNASGLTEAE
VNALSGGSAEAAPATAAAAIDEAGEESSAS
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccgcaccttcaagccggaacgcgacggcctgttctgctcggcc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgagaagtgcggcaccgaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggccagcccggtcgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgatgctggacatgacactgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtcaccgagccgggcctgacctcgctcgagcgccgccagctgctg
accgaagagcagttcatgcaggcgcgccaggaacacggcgacgacttcgacgccgccatg
ggcgccgaggccgtttacgacctgctgcgtacgatcgatctgcaggccgagatggtgaac
ctgcgcgaggaaatcgccagcaccggttcggagaccaagctcaagcgcctcaccaagcgc
atcaagctgatggaagcgttcctggaatcgggcaaccgtccggaatggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgcttgacggtggccgcttc
gcgacctccgacctgaacgatctgtatcgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctggagttgaatgctcccgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggttgatgccctgatggacaacggccgtcgcggccgcgccatcaccggcaccaac
aagcgcccgctcaagtcgttggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctgggcaagcgcgtcgactactccggccgttcggtcatcgtggtcggcccgacc
ctgcgcctgcacgagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgacgtctgggacatcctggaagaggtcatccgcgagcacccg
gtgctgctgaaccgtgcaccgacgctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcacggcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtcccgctgagcctcgaagcccagctggaagca
cgcgcgctgatgatgtcgtccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggtctgtactacatgacccgcgcgctggagaacaag
aagggcgagggcatggcgttcgccaacatcgccgaggtcaagcgcgcctacgacaaccgt
gccgtcgagctgcatgcgaaggtcaaggtccgcatcagcggcaccgtgatcgacgaggaa
ggtggccgcagcaagcagaccagtatcgtggacaccacgatcggtcgcgccctgctggcc
gagatcctgccggaaggcctgccgttcgccctggtcaacaccgagttgaacaagaaggcc
atcagccgcctgatcaactccagctaccgcatgctgggcctgaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcgcgtacgccacgcgcgccggcgtctccatcggc
atcgacgacatgctgatcccggccgagaagaagggcatcctgggcgaagccgaacaggaa
gtgctggaaatccaggagcagtaccagagcggcctggtcaccgcgggtgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggaaacc
atcggtaccgacaaggtgcagaacgccaagggcgagaccatcaacgagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcccgcggcagccaggcgcagatccgccagctg
gccggcatgcgcggcctgatggcccgccccgatggttcgatcattgagacgcccatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccga
aagggtctggccgataccgcgctgaagacggcgaactccggttacctgacccgccgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaggtcgactgcggtacgtcggaaggcctg
atgatgaccccgatcgtggaaggcggcgacgtggtcgaaccgctgcgtgaccgcgtgctg
ggccgcatcgtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacacgctgctggacgaagcctgggtgcagaagctggaagacgccggtgtgcaggcg
ctgaaggtgcgctccaccatcacctgcgaatccgatttcggcgtctgcgcgcactgctac
ggtcgcgacctggcccgtggccacatcgtcaacatcggcgaagcggttggcgtcatcgcc
gcccagtcgatcggcgagcccggcacccagctgaccatgcgtacgttccacatcggtggt
gcggcatcgcgtgcggcggcggtcgacaacatcaccgtcaagaccaccggctcgatcaag
ttcaacaacctcaagttcgtcgaacacgccaacggcagcctggtcgcggtgtcgcgttcg
ggtgaactgtcggtgctcgacggccacggtcgcgagcgcgagcgctacaagctgccctat
ggcgccaccatcaacgtcaaggacggcgaccagatcaccgccggccaggccgtggcgaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggcttcgtgcgcttcgtcgac
ttcgtggatggcgtcaccgtcatcgagaagaccgacgacctgacgggcctggcctcgcgc
gagatcaccgatccgaagcgtcgcggttcgcagggcaaggacctgcgcccgatcgtccgc
atcgtggacaaggacggcaaggacctgagcatcccgggtaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggcgcgcccgtcggcgtgggcgac
gtggtcaccaaggtgccgcaggaagcgtccaagacccgcgacatcaccggcggtctgccg
cgagtcgccgacctgttcgaagcccgcaagccgaaggatccggcgatcctggccgagcgc
tccggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggagcacgaagagctgattccgaagttccgccagatcatcgtgttcgaa
ggcgagcacgtggccaagggcgaaaccatcgtcgacggcgagccgagcccgcaggacatc
ctgcgcctgctgggcgtcgagccgctggcggcctacctggtcaaggagatccaggacgtc
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcacgcgccagatg
ctgcgcaaggtggagatcaccgacgccggcaacagcaagttcctggccggcgagcaggtc
gagaagcaacgctttatcgaagagaacgccaagctgttggcccgtaacgagctgcctgcg
aagtacgacccggtgctgctgggcatcaccaaggcctcgctggcgaccgagtcgttcatc
tcggcggcctccttccaggagaccacgcgcgtgttgaccgaagcggccgtccgcggcacc
cgtgacaccctgcgcggactgaaggaaaacgtcatcgtcggccgcctcatcccggcgggt
accggcctggcgtaccacaaccagcgccgtcgcaatgcttcgggcctgaccgaggcggaa
gtgaatgccctgtcgggcggcagcgccgaggccgctccggcgaccgcggccgccgccatc
gacgaagccggcgaggagtccagcgccagctaa
DBGET
integrated database retrieval system
