Pseudoxanthomonas sp. SE1: OY559_18335
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Entry
OY559_18335 CDS
T10619
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psse Pseudoxanthomonas sp. SE1
Brite
KEGG Orthology (KO) [BR:
psse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psse03016
]
OY559_18335
Enzymes [BR:
psse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OY559_18335
Transfer RNA biogenesis [BR:
psse03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OY559_18335
Prokaryotic type
tRNA splicing ligases
OY559_18335
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WFC41702
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All DBs
Position
3895913..3897136
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AA seq
407 aa
AA seq
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MNMQTHFELLHAEGSATPIKGWVRGVPLDQGAHEQLRNIAAIPFVGPWVAVMPDVHLGKG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAKDLPDNLAQLRSSIERSVPVGNGRG
GEHWKLPDSIRTRITQSGLEPRLEAIKQKHRKIRTDKLDRQIGTLGGGNHFIEICLDEAD
AVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMEGESLFDDYVEAV
SWAQDYARENREAMMSRVLAEMRHRLPKFQLEKMAVNCHHNYVQKETHGGVDLLVTRKGA
VSARAGELGIIPGSMGAKSFIVRGKGNADSFHSCSHGAGRVLSRTAARQQITLSQHREAT
AHVECRKDAGVIDESPAAYKDIDAVMAAQSDLVEVVHTLRQVVCIKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgcaaacacacttcgaactgctgcacgccgagggcagcgccacgccgatcaag
ggctgggtgcgcggcgtgcccctggaccagggcgcccacgagcagctgcggaacatcgcg
gcgattcccttcgtcggcccgtgggtcgcggtgatgcccgacgtgcacctgggcaagggc
gcgaccgtgggctcggtcattccgacgcgcggtgccatcattcctgcggcggtcggcgtg
gacatcggctgcggcatggccgcggtgcggaccacgctgcgcgcgaaggacctgcctgac
aacctggcgcaactgcgttcgagcatcgagcgcagcgtgccggtgggcaacggccgcggc
ggtgagcactggaagctgccggacagcatccgcacgcgcatcacccagtcggggctggag
ccgcgcctggaggcgatcaagcagaagcaccgcaagatccgcaccgacaagctggaccgc
cagatcggcacgctgggcggcggcaaccacttcatcgagatctgcctggacgaggccgac
gcggtgtgggtgatgctgcacagcggttcgcgcggtaccggcaacctgatcggcacgtac
ttcatcgagcgcgcacgcgagcagttggcgcaccgcgtgctcggcttccatctgccggac
aaggacctggccttcttcatggaaggcgagtccctgttcgacgactacgtggaagcggtg
tcgtgggcgcaggactacgcgcgcgagaaccgcgaggccatgatgtcgcgcgtgctggcc
gagatgcgtcaccgcctgccgaagttccagttggagaagatggcggtcaactgccaccac
aactacgtgcagaaggaaacgcatggcggcgtggacctgctggtcacccgcaagggtgcg
gtgagtgcgcgtgccggtgagctggggatcatccccggcagcatgggcgcgaagagcttc
atcgtgcgcggcaagggcaacgcggacagcttccacagctgcagccacggggccggccgc
gtgctgagccgtaccgccgcgcgccagcagatcacgctgtcgcagcaccgcgaggccacc
gcgcacgtcgaatgccgcaaggacgccggcgtgatcgacgaatcgccggcggcctacaag
gacatcgatgcggtcatggccgcgcagtccgacctggtggaggtggtccacacgctgcgc
caggtggtgtgcatcaaggggtga
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