Pseudomonas sp. SGAir0191: CWR53_21795
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Entry
CWR53_21795 CDS
T12047
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pssg Pseudomonas sp. SGAir0191
Pathway
pssg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pssg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWR53_21795 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pssg03021
]
CWR53_21795 (rho)
03019 Messenger RNA biogenesis [BR:
pssg03019
]
CWR53_21795 (rho)
Transcription machinery [BR:
pssg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CWR53_21795 (rho)
Messenger RNA biogenesis [BR:
pssg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CWR53_21795 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AUA35035
LinkDB
All DBs
Position
complement(4842919..4844178)
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatcttttggaaatggccgaacaa
atgggcatcgagaacatggcccgttcgcgcaaacaggacgtgattttctccctgctgaaa
aagcatgcgaaaagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggcttcggtttcctgcgttctgctgatgcgtcctacctggccggccctgacgatatctac
gtttcgccgagccagatccgccgcttcaacctgcgtaccggcgacaccatcgttggcaag
atccgtccgccgaaggaaggggagcgttacttcgccctgttgaaggtcgataccatcaac
ttcgatcggccggaaaacgccaagaacaagatcctgttcgaaaacctgacgccgctgttc
cccaacaagcgcctgaagatggaagctggcaacggctccaccgaagacctgaccggccgt
gtcatcgacctgtgcgccccgatcggcaagggtcagcgtggcctgatcgtcgccccaccc
aaggcgggcaagaccatcatgctgcagaacatcgcagccaacatcacgcgtaacaaccct
gagtgccacctgatcgttctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgtaccgtacgcggcgaagtggttgcatccaccttcgacgagccgccaacccgtcacgtg
caagtggccgaaatggtcatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctcgactccatcacccgtctggcacgtgcctacaacacggtcattccaagc
tccggcaaagtgctgaccggtggtgtcgacgcccacgccctggaaaagcccaagcgcttc
ttcggggccgcccgtaacatcgaggaaggcggctcgctgaccatcatcgccaccgcgctg
gtcgaaaccggttcgaagatggacgaggtgatctacgaggaattcaaaggcaccggcaac
atggagctgcccctggaccgtcgtatcgctgaaaagcgtgtgttccccgccatcaacatc
aaccgttcgggtactcgccgcgaagagctgctgaccgccgacgacgaactgcaacgcatg
tggatcctgcgcaagctgttgcacccgatggacgagatcgctgccatcgagttcctggtc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtaa
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