Pseudomonas sp. J380: FXO12_19455
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Entry
FXO12_19455 CDS
T12049
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pssj Pseudomonas sp. J380
Pathway
pssj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pssj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FXO12_19455 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pssj03021
]
FXO12_19455 (rho)
03019 Messenger RNA biogenesis [BR:
pssj03019
]
FXO12_19455 (rho)
Transcription machinery [BR:
pssj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FXO12_19455 (rho)
Messenger RNA biogenesis [BR:
pssj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FXO12_19455 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QHA98807
LinkDB
All DBs
Position
4322309..4323568
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccaattggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagatcctccaggac
ggcttcggcttcctccgctctgcagacgcgtcctatctcgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcactggtgacaccatcgttggcaag
atccgtcctccgaaggaaggcgagcgttacttcgccctgctcaaggtcgacacgatcaac
ttcgaccgcccagagaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggctccaccgaagacttgaccggtcgt
gtgatcgatctctgcgctccgatcggcaaaggccagcgtggcctgatcgtcgcaccgccg
aaagccggcaagaccatcatgctgcagaacatcgccgcgaacattgcacgtaacaaccct
gaagttcatctgatcgtgctgttgatcgatgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacgttcgatgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgaaaaggccaagcgcctggtcgagcacaagaaagacgtg
gtgatcctgctcgattccatcacgcgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgatgcccacgccctggagaaaccaaagcgtttc
ttcggcgctgcgcggaacatcgaagaaggcggctcgctgaccattatcgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcctttggaccgccgcatcgctgaaaagcgtgtgttcccggcgatcaacatc
aaccgctccggcacccgccgcgaagagttgctgaccgcagacgacgaactgcagcgtatg
tggatcctgcgcaagctgctgcacccgatggacgaagtcgcggccatcgagtttctgatc
gacaagctgaaaaccaccaagaccaacgacgagttcttcctgtcgatgaaacgcaagtaa
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