Pseudarthrobacter sp. So.54: ACOM2C_19270
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Entry
ACOM2C_19270 CDS
T11055
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psso Pseudarthrobacter sp. So.54
Pathway
psso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACOM2C_19270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psso03019
]
ACOM2C_19270
Messenger RNA biogenesis [BR:
psso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACOM2C_19270
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
XTR52008
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Position
3798731..3800422
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AA seq
563 aa
AA seq
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MTQTALPGLVTPPKLLKDTLRIVPLGGLGEIGRNMTVFEIDGKLLIVDCGVLFPEETQPG
VDLILPDFSYIKNRVDDIVAVVLTHGHEDHIGAVPYLLRLRADIPVVGSRLTLALIEAKL
LEHRIKPVTQTVTEGQVQKFGPFECEFVAVNHSIPDALAVFLRTSGGTVLHTGDFKMDQL
PLDGRITDLRHFAKLGEEGVDLFMSDSTNADVPGFTTAEKEIGPTLDRLFGQASKRLIVA
SFSSHVHRVQQVLDAAANHNRKVAFVGRSMVRNMAIAEKLGYLDVPPGLLVDIKNIDNLP
DNRVVLMSTGSQGEPMAALSRMANGDHRVVVGQGDTVILASSLIPGNENAVYRIINGLLK
LGADVIHKGTAKVHVSGHAAAGELLYCYNILEPLNAMPVHGETRHLIANGKIALDSGVPE
ESILLADNGTVIDLRDHQADIVGQVEVGFVYVDGSSVGEVTESDLKDRQTLGDEGFISII
TVIHRATGKVVSGPEIHARGVAEDDSVFDEIIPKINAALEEAVLNRTDHTTHQLQQVVRR
VVGTWVNRKLRRKPLIIPVVLEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaactgcccttcccggcctcgtcacgccgccgaaactgctcaaggacaccctg
cggattgttccgctcggtggactgggggagatcggccgcaacatgaccgttttcgagatc
gacggcaagctgctgatcgtcgactgcggtgtcctcttcccggaggaaacccagcccggc
gtcgacttgatcctgcccgatttctcgtacatcaagaaccgcgtcgacgacatcgtggcc
gtcgttctgacccacggccacgaggaccacatcggggccgttccctacctgctgcgcctg
cgcgcggacattcccgtggtgggttcccggctgacgctggctctcattgaggcgaaactg
ctggagcaccggatcaagccggtcacccagaccgtcaccgaaggccaggtgcagaagttc
ggtccgttcgaatgcgaattcgtggccgtcaaccactcgatccccgacgctcttgccgtg
ttcctgcgcacctccggcggcaccgtgctgcacaccggtgacttcaagatggatcagctg
ccgctggacggccgcatcaccgacctccgccacttcgcgaagctgggcgaggaaggcgtg
gacctgttcatgtcggactccacgaacgccgacgtccccgggttcaccacggcggaaaag
gaaatcggtcccaccctggaccggctcttcggccaggcctccaagcgcctgatcgtcgcc
tccttctcctcccacgtgcaccgcgtccagcaggtcctcgatgccgccgcaaaccacaac
cgcaaggtcgcgttcgtcggccggtcgatggtccgcaacatggcgatcgccgagaagctc
ggctacctcgacgtcccgccgggcctcctggtcgacatcaagaacatcgacaacctgccg
gacaaccgcgtggtcttgatgtccaccggctcgcagggtgagccgatggcagccctgtcc
cggatggccaacggtgaccaccgcgtggtcgtcggccagggcgacactgtcattctcgcc
tccagcctgatcccgggcaacgagaacgccgtgtaccgcatcatcaacggcctgctgaag
ctcggcgccgacgtcatccacaagggaaccgccaaggtgcacgtctccggccacgccgcc
gcgggggagctgctgtactgctacaacatccttgagccgctcaacgcgatgccggttcac
ggcgaaacccgccacctgatcgccaatggcaagattgccctggactccggtgtccccgaa
gagagcatcctcctggcggacaacggcacggtcatcgaccttcgcgaccaccaggcggac
atcgtcggccaggtggaagtcggcttcgtctacgtggacggctccagtgtcggcgaggtc
accgaatccgacctcaaggaccggcagacgctcggtgatgaaggtttcatctccatcatc
acggtgatccaccgcgccaccggcaaggtggtctccggtccggagatccacgcccgcggc
gtggctgaggacgattcggtcttcgacgagatcatccccaagatcaacgccgccctggaa
gaagccgtgctgaaccgcacggaccacaccacgcaccagctccagcaggtcgtccgccgt
gtggtgggcacctgggtcaaccgcaagctccgccgcaagcccttgatcatcccggtggtc
ctggaggcgtag
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