Pseudomonas sp. SXM-1: DCC84_04125
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Entry
DCC84_04125 CDS
T11095
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pssx Pseudomonas sp. SXM-1
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pssx03016
]
DCC84_04125 (truB)
Enzymes [BR:
pssx01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
DCC84_04125 (truB)
Transfer RNA biogenesis [BR:
pssx03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DCC84_04125 (truB)
Prokaryotic type
DCC84_04125 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
BAT
Motif
Other DBs
NCBI-ProteinID:
QBQ08970
LinkDB
All DBs
Position
917754..918671
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AA seq
305 aa
AA seq
DB search
MAQVKRIRRNVSGIILLDKPIGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG
EATKFSQYLLDSDKGYETLMQLGKTTTTADAEGDVLQVREVTVGRADIEAALPAFRGQIS
QIPPMYSALKRDGQPLYKLARAGEVVEREPRSVTIARLELLAAEGDTARLAVDCSKGTYI
RTLVEDIGEQLGCGAYVAELRRTQAGPFTLAQTVTLEELEAVHAEGGNEAVDRFLMPSDS
GLLDWPLLHFSEHSAFYWLNGQPVRAPDAPKFGMVRVQDHNGRFIGIGEVSEDGRIAPRR
LIRSE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtggctcaggtcaaacgtatccgtcgtaatgtcagcggcatcattctgctcgacaagccc
attggttttacctccaatgcggcgttgcagaaggttcgctggctgctcaatgccgagaag
gcagggcacaccggcagcctcgaccccttggccaccggcgtgttgccgttgtgcttcggc
gaggccaccaagttttcgcaatacctgctcgattccgacaagggctacgagaccctgatg
caactgggcaagaccaccaccacggcagacgccgaaggtgatgttttgcaggttcgcgag
gtgaccgttggtcgtgctgatatcgaagctgccttacctgcttttcgtgggcaaatcagt
cagataccgccgatgtactcggctctcaagcgtgatggccagcctctttacaagctggca
cgtgcaggggaagtggtggagcgcgaaccgcgttctgttactattgcgcgcttggaattg
ctcgccgctgaaggcgacactgcccggttggcggtggactgcagcaaaggcacctatatc
cgcaccctcgtggaagatatcggtgagcaactaggctgtggcgcatacgttgcagaactg
cgacgcacccaggcaggccctttcaccctggcccagacggtcacgctggaagagctggaa
gcagtgcatgccgaaggcggcaacgaagcggttgatcgcttcctgatgccatcggacagc
ggtttactggattggccattgctgcacttctcggagcacagcgcgttctactggcttaac
ggccagccggtacgtgcaccggatgccccgaagttcggcatggtgcgggtacaagatcac
aacggtcgctttatcggtatcggtgaagtgagcgaagacgggcgcatcgcgccgcgtcga
ctgattcggtcagaatga
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