Pseudomonas sp. SXM-1: DCC84_04135
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Entry
DCC84_04135 CDS
T11095
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pssx Pseudomonas sp. SXM-1
Pathway
pssx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCC84_04135 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pssx03019
]
DCC84_04135 (pnp)
03016 Transfer RNA biogenesis [BR:
pssx03016
]
DCC84_04135 (pnp)
Enzymes [BR:
pssx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DCC84_04135 (pnp)
Messenger RNA biogenesis [BR:
pssx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DCC84_04135 (pnp)
Transfer RNA biogenesis [BR:
pssx03016
]
Prokaryotic type
tRNA degradation factors
DCC84_04135 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
QBQ08972
LinkDB
All DBs
Position
919295..921400
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA
TALLGAIRSEFGTAISDAYTITIKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSIAAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggttatcaaaaaattccagttcggtcagtcgaccgttaccctcgagacaggc
cgtatcgcccgtcaagcctccggcgcagtgctggttaccgttgacgacgacgtcaccgta
ttggtgaccgttgtaggcgccaagaccgctgacccaagcaaaggcttcttccctctttcc
gttcactaccaggaaaagacttacgctgcaggtaagatccctggtggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggcggccctggccatc
tccggtattcctttcgatggcccgatcggcgctgcccgtgttgcattccacgaaagcacc
ggctacctgctgaacccgacttacgaacagcagaaagcttcgagcctggacatggtcgtt
gccggtacttcggaagccgtgttgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgctgtactgtttgctcacgacgagttccaggttgtgatcaacgctgta
aaggaactggccgctgaagctgccaagccaacctggacctgggctcctcagccagaagct
accgcactgctgggcgctatccgctccgagttcggcaccgctatctccgacgcctacacc
atcaccatcaaggccgaccgttacgctcgcctgggtgagttgaaggaccaggttgttgcc
aagctgtccggtgaagaaggccagccttcttccagcgaagtcaaagcagccttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggccgc
gacacccgcaccgtacgtccgctgaacatcgaagtcggcgttctgccaaaaacccacggt
tcggccctgttcacccgtggtgaaacccaggccctggttgttgcaacactgggtactgcc
cgtgacgcacagctgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccattctcggtaggtgagtgtggtcgcatgggtggcgctggtcgtcgc
gaaatcggtcacggccgtctggcccgtcgttcgattgcagccatgttgcctgccgccgac
gtgttcccgtacaccattcgtgttgtgtcggaaatcaccgagtccaacggttccagctcc
atggcttcggtctgcggcgcttccctggctctgatggatgccggcgttccgatgaaggca
ccggttgccggtatcgccatgggcctggttaaagaaggcgagaagttcgccatcctgacc
gacatcctgggcgacgaagaccacctgggcgacatggacttcaaagtagccggtaccgcc
aaaggtgttaccgcgctgcagatggacatcaagatcaagggcatcaccgaagaaatcatg
gaaatcgctctgggccaagccctggaagcgcgcctgaacatcctcggtcagatgaaccag
atcattggccagtcccgtaccgaactgtcggaaaatgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgttatcggtaaaggcggcgcgaccattcgtgcgatc
tgtgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggctgaagcggcacgtcagcgcgtcctgggtatcactgctgaagcc
gagatcggcaagatctacgtcggtaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgccgggcaaggacggtctggttcacatctccatgctgagcgatgctcgcgtt
gagaaagtgaccgacatcctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaggacgtagcagcagccaaggcttcgggc
gtttaa
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