Pseudomonas sp. SXM-1: DCC84_06315
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Entry
DCC84_06315 CDS
T11095
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pssx Pseudomonas sp. SXM-1
Pathway
pssx03030
DNA replication
pssx03430
Mismatch repair
pssx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DCC84_06315 (dnaE)
03430 Mismatch repair
DCC84_06315 (dnaE)
03440 Homologous recombination
DCC84_06315 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pssx03032
]
DCC84_06315 (dnaE)
03400 DNA repair and recombination proteins [BR:
pssx03400
]
DCC84_06315 (dnaE)
Enzymes [BR:
pssx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DCC84_06315 (dnaE)
DNA replication proteins [BR:
pssx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DCC84_06315 (dnaE)
DNA repair and recombination proteins [BR:
pssx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DCC84_06315 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
QBQ09378
LinkDB
All DBs
Position
1365962..1369483
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG
IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLGGNPHEAEVLAREWMEVFPNRFYLEIQRTNRPNDEEQ
LHAAVALAEKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTDALKGDQLRWLGDLLKRHRGACPVTMEYTGNDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaacccctggtcaaaacgctggtgggcatgaacatgcctgccgtggcggtg
accgaccagaacaacatgtgttccctggtcaagttctacaaggccgccatgggcgccggc
atcaagccgatctgcggtgccgacctgtggctgtcgaacaaggacccggataacccactg
agccgcatcagcctgttggcgatgaacggcgtgggttatcgcaacctcaccgaactgatt
tcccgtggctttatcgatggccagcgcaatggctcgatcatcatcgagcgcgagtgggtg
gccgaagccagcgaagggctgatcatgctctcggcggccaaagagggtgaaatcggtatc
gcgctgttgggcggcaatcctcatgaggctgaagtgctcgcccgtgagtggatggaggtg
ttccccaaccgtttctacctggaaatccagcgcaccaaccgccccaacgatgaagagcag
ttgcacgccgctgtggccctggctgaaaagcttggcgcgccgctggtggcgaccaacgat
gtgcgctttatcaagaaggaagacttcgaggcccacgaaacccgcgtatgcatcggcgaa
ggccgggcgctggacgatccgcgccgctcgaaaaactacagcgaagagcagtacctcaaa
agcgccgatgaaatggccgagctgttcagtgacctgcccgaggccctggaaaactccgtc
gaaattgccaagcgctgcaatattgaagtgaagctgggcaagcacttcctgcccaacttc
ccgattcccgatggcatgaccatcgacgagtatttccgcaaggtctcgttcgacggtttg
gaggaacgcctgagcgtcctgctgcccaaggacaccactgaagattatgaagccaagcgc
caggtctacgtcgaccgcctgaatttcgagctggatatcattatccagatggggttcccc
ggttacttcctgatcgtaatggactttatccagtgggccaaaagcaacggcgtgccggtg
ggcccaggccgtggatcgggtgccgggtcgctggtggcctatgtgcagaagatcaccgac
ctcgacccgctggaatatgacctgctgttcgaacgtttccttaacccggaacgggtatcg
atgcccgacttcgacgtcgacttctgcatggatggtcgcgaccgggttattgagtacgtg
gccgagaaatacgggcgcaacgcggtaagccagatcatcaccttcggttccatggcggcg
aaagcggtaattcgcgacgtggcccgggtacagggcaagtcctacggcctggctgaccgc
ctgtcgaagatgattccgtttgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgggacttcatcaaggtcgatgaagaagcggctgaaatctgggacatggcg
cgcaagctcgaaggcgtggtgcgtaacgtcggtaagcacgccggtggtgtggttatcgcg
ccgaccaagctgactgacttttcgccgatctattgcgacgaagaaggcgacggcctggta
acccagttcgacaaggacgacgtggaggcggccggcctggtgaagttcgacttcctcggc
ctgcgtaccctgacgatcatcgactgggcgctgaagaccatcaaccgcgaccgcgccaag
gtcaatgagccaccgctggatatagcgtttatcccgctggatgacaagccgacctacagc
ctgctgcaaaaagccgaaaccacggccgtgttccagcttgaatcccgcggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggcccgctgcaatcgggcatggtggatgacttcatcaaccgtaagcacgggcgt
gccgagctggcttacccgcactccgactaccagtacgaaggtctcaagccggtactggca
ccgacctacggcatcatcctgtatcaagaacaggtgatgcagattgcccaggtcatggcc
ggctataccctcggcggcgcggacatgctgcgtcgagccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggtggcttcattgaaggttgcgccaccaacaacatcgatgcc
gacctggccggtaacatcttcgacctggtggaaaagttcgccggttacggcttcaacaaa
tcccactctgccgcctatggcctggtgtcttaccagactgcgtggctgaaggctcactac
ccggcgccgttcatggcggcggtactgtctgcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcaccatgaagctgcgcctcgacgcgccggacgtgaacact
tccgagttcaagttcacggtgaacgacgaaggccgcatcatctatggcctcggcgcgatc
aagggcgtgggcgaaggcccggtggaggcgattaccgaagcgcgtcaggacgggccgttc
aaggacctgttcgatttctgcgcccgggtcgacctcaagcgcatcaacaaacgtactctg
gatggcttgatccgcagcggcgccctggatcgcctgggcccgtacttccatgacgagccg
aaggcgtaccaggccaatatcgaccgcaaccgcgcggtattgctgaccgccatggaagaa
gcgatcaaggccgccgagcagaccgcacgcacccacgacagcggccacgccgacctgttt
ggcgggctgttcgtcgaagaagatgccgacgtctacgccaaccatcgcaaggccaaggag
ctgaccctcaaggaacgcctcaagggtgagaaagacaccctgggcctgtacctcaccggt
cacccgattgacgaatatgaaggtgaaatccggcgtttcgcccgccagcgcatcatcgac
ctgaagccggcgcgggatacccaaaccgtcgcaggcatgatcatcgcgctgcgggtgatg
aagaataaaaagggcgacaagatgggtttcatcaccctcgacgaccgctcgggccggatc
gaagcctcgctgtttgccgatgcattccattccgcccagtcgctgttgcagaccgacgcg
atggtggtggtggaaggggaggtcagcaacgacgacttctccggcggcctgcgcctgcgg
atcaagcgcgtgatgagcatggaagatgcccgcaccaacctggccgaaagcctgcgcctg
aaggtcaagaccgatgcgctcaaaggcgatcagctacgctggttgggtgacttgcttaaa
cgccaccgtggcgcctgcccggtgaccatggagtacaccggcaacgacgccaaggcgatg
ttgcagtttggtgagacgtggcgaattgaccccgccgatggcttgattcaagcattgcgt
gaccagttcgggcgtgacaacgtcttcctccaataccgttga
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