Pseudomonas sp. SXM-1: DCC84_08755
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Entry
DCC84_08755 CDS
T11095
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pssx Pseudomonas sp. SXM-1
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pssx03032
]
DCC84_08755 (topA)
03400 DNA repair and recombination proteins [BR:
pssx03400
]
DCC84_08755 (topA)
Enzymes [BR:
pssx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DCC84_08755 (topA)
DNA replication proteins [BR:
pssx03032
]
Prokaryotic type
DNA Topoisomerases
DCC84_08755 (topA)
DNA repair and recombination proteins [BR:
pssx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DCC84_08755 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QBQ09834
LinkDB
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Position
1868820..1871441
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGNN
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVAMARTYIESEFGKKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESAENGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPKKDPDGRPSVIRYSRKTK
EQYVQTEVEGKPTGWKAFYDGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggtaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgcggcaaggcggctgcgggcgaa
ggtccggtgctcacgcctaaagagaaagcgcgcaagcagctggtctcgcgcatgggtgtc
gatcccgatcatggctggaaagccaagtacgagatcctcccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggac
cgcgaaggggaggctattgcctggcacctgcgggaagccatcgggggtgacgacagccgc
tacaagcgcgtggtgttcaacgaaattaccaagaaggcgatccaggaagccttctccaag
ccgggcgaactggacattgaccgcgtcaatgcccagcaggcccgtcgcttcctcgaccgc
gtcgtgggttacatggtctcgccgctgctgtgggcgaaaatcgctcgtggcctgtccgcc
ggccgtgtgcaatcggttgcggtaaagctggtggtggagcgtgagcgcgagattcgtgcg
ttcaaccctgaagaatattgggaagtgcacgctgacctgggcactgccaagggcaacaac
gtacgctttgaagtggcccgcgagaaaggcgaggccttcaagccgctcaacgaagcccag
gccatggccgcgctggagaagctcaaggcttccagctacagcatcgtcaagcgtgaagac
aagcccaccagcagcaagccgtcggcgccgttcatcacctccaccctgcaacaggccgcg
agcaaccgcctgggcttcggggtgaagaagaccatgatgatggcccagcgcctgtatgaa
gcgggctacatcacgtatatgcgtaccgactccaccaacctgtcgcaagacgcggtggcg
atggcgcgtacttatattgaaagcgaattcggcaagaagtacctgccggagaagccgaac
gtctatagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccctccgacgcc
aacaccgagccaagcaagctgagcggcatggagcgcgacgctgagcgcctctatgagctg
atctggcgccagttcctggcgtgccagatgctgccggcgcaatacctgtcgacgactgtc
agcgtgggtgctggtgacttcgagctgcgtgccaagggccgtatcctcaagttcgacggt
tatacccgcgtgatgccgcaaatcgccaagccgggcgacgacgatgtactgccggacatg
gcgcagggcgatgtgttgaagctgatcaagctcgacccgtcccagcacttcaccaagccg
ccggcgcgttattcggaagccagcctggtcaaggagatggaaaaacgcggtatcggtcgt
ccttcgacctatgcggcgatcatctccaccatccaggaccgcggctacgtggccttgcac
aaccgtcgtttctactcggaaaagatgggcgacatcgtcaccgagcgcctgtccgagagc
ttctccaacctgatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccagggcgaacgcgactggaaaaacgtgctcgacgagttctacggcgacttcaagaag
aaacttgaagtggctgaaagcgccgagaacggcatgcgggccaaccagccggtgatgacg
gacattccgtgcctcacttgcggtcgcccgatgcagattcgtaccgcctccaccggtgtg
ttcctcggttgctcgggttacagcctgccgccgaaagagcgctgcaaggccaccgtcaac
ctggtgccgggcgatgaaatcgcggccgatgacgagggtgagtccgagtcactggtattg
cgtggcaagcaccgttgcccgatctgcagcacggcaatggatgcctacctgctggacgag
aagcacaagctgcacatctgcggtaacaacccggattgcaacggctacgagatcgaagaa
ggcacttaccgcatcaagggctacgaaggcccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccgacgtgc
aagaacacccgcaaactgctgaaaagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcctgagctcaagtgcgagaaggtcaacgacacctacatcctgcgtgatggtgct
tcggggctgttcctggctgccagccagttcccgaaaaaccgtgagacccgtgcaccgctg
gtgatggagatcgtgccccacaaggacgagatcgatccgaagtaccacttcctctgtgaa
gcgccgaagaaggacccggacggtcgcccgtccgtaatccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaagtggaaggcaagcctaccggctggaaagcgttctacgac
ggtggcaagtggaaggtcgaggacaagcgccagggcgcttga
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