Pseudomonas sp. SXM-1: DCC84_09575
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Entry
DCC84_09575 CDS
T11095
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pssx Pseudomonas sp. SXM-1
Pathway
pssx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCC84_09575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pssx03019
]
DCC84_09575
03009 Ribosome biogenesis [BR:
pssx03009
]
DCC84_09575
Enzymes [BR:
pssx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DCC84_09575
Messenger RNA biogenesis [BR:
pssx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCC84_09575
Ribosome biogenesis [BR:
pssx03009
]
Prokaryotic type
rRNA helicases
DCC84_09575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QBQ09983
LinkDB
All DBs
Position
2040394..2042067
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattcttgctgcc
gtcatcgcgactggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggccaagacatgattggccaagcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgccaatcctgcactgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaacggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtgctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgctcaagctgggcttcatggacgacctggaagtcatcttcaaggcactgccagcaacc
cgtcagaccgtactgttctcggctaccctgccacagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgctggt
cgcgaaggtcgtgcattgttgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaagtccgcctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctgtcgccactggtggctgatgctgaatcg
acccacggcgacctgctggaccgcctgactgccgatatcggttgcaccccgcgtgccctg
gctgcagccctgctgcgcaaggcgaccaacggtcaggccctgaccctggctgccatcgag
aaagaacgtccactggtgccgaacaacgctccgcgcggtgatcgtccagagcgtactggc
gaccgtccggaccgtggtgatcgtgagcgtcgtgctccggttccattggctgaaggccgt
gctcgctgccgtaccgcgctgggcgcgcgtgatggcatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagcgatcggtcgcatccaggtgcgtgac
agcttctccctggtggagctgccggaagatggcctggagaaactcctgaccaagctgaag
gacacccgcgttgccggtaagcagttgaagctgcgtcgctaccgcgaagattga
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