Pseudomonas sp. SXM-1: DCC84_18275
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Entry
DCC84_18275 CDS
T11095
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pssx Pseudomonas sp. SXM-1
Pathway
pssx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DCC84_18275 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pssx03400
]
DCC84_18275 (ligD)
Enzymes [BR:
pssx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DCC84_18275 (ligD)
DNA repair and recombination proteins [BR:
pssx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DCC84_18275 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QBQ11556
LinkDB
All DBs
Position
3852443..3854941
Genome browser
AA seq
832 aa
AA seq
DB search
MAKPLSEYNAKRDFDVTAEPAGSAPRARNRAHALSFVIQKHDARNLHYDFRLELDGVLKS
WAVPKGPSLDPSQKRLAVHVEDHPLGYGSFEGSIPAGQYGAGDVIVWDRGVWQPHDDPHK
AYAAGKLKFSLIGEKLAGDWTLVRIRLKGSGDKEQWLLIKENDQQARPVADYDVVQAEPK
SVLSDATVGAVKKPAAPKKARRKPSTDLPDQLAPQLATLVDRAPEGDWVYEIKFDGYRIL
ARIRDGEVRLFTRNGHDWTDRLPRQAKALEALKLKDSWLDGEVVSLNADGLPDFQALQNA
FDIGRSLDIVYYLFDAPFLDGRDQREAAVEERRTALKDAVSRSKSKLLRFSESFAANQRD
IFESACDLALEGVIGKRAGSSYVSRRSPDWIKLKCRLRQEFVIVGFTRPQGSRSGFGALL
LAVNDDSGLVYAGRVGTGFDQAALKKISAQLKALERQTSPLAKPLTSAQARGVHWVEPQL
VGEVQFAEWTREGVVRQAAFVGLRTDKPAEQIVHEQPRTAKSLKEKPRKKTAGTGAVAGV
RITHPDRVIDAQSATQKLQLAQFYEGISEWLLPFLRNRPVSLLRAPEGIAGEQFFQKHSE
RLAIPNIKQLDQALDPGHARLMEIDSPAALIGAVQMGTVELHTWGATADKIEAPDLFVLD
LDPDPALPWKSMLEAAQLTLSVLDELGLEAFVKTSGGKGLHLVVPLARRDGWDSVKAFAK
AIAQFMTLQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSR
DELKSLHSAQQWTVANLHERLQGLKKDPWAGYANRQKISKKMWEKLGAHPPG
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgagtgaatacaacgccaagcgcgacttcgatgtgaccgccgaaccc
gccggcagtgcgcctcgcgccaggaaccgggcgcatgccctgtcgttcgtgattcaaaag
cacgatgcgcgcaacctgcattatgactttcgcctggagctcgacggcgtcctcaaaagc
tgggcggtgcccaagggcccaagcctcgacccgagccagaagcgcctcgcggtgcatgtg
gaagatcatccattgggctacggcagtttcgagggcagcattccggcaggccaatacggc
gctggcgatgtgatcgtgtgggatcgcggtgtatggcagccccacgatgacccgcacaag
gcctacgcggccggcaagctgaagttcagcctgatcggcgaaaaactggcaggcgactgg
acgctggtgcgcatccgactcaagggcagcggcgacaaggagcagtggttgttgatcaag
gagaacgatcagcaggcacgcccggtggctgactacgatgtggttcaggctgaaccgaaa
agcgtgctgagcgacgcaacggtgggggctgtgaaaaagcccgcagcgccgaagaaagcc
aggcgcaagccctcaaccgacctgcccgatcaactcgcgccacagctggcgacactggtg
gaccgtgcaccggaaggcgattgggtgtacgagatcaaattcgacggctatcgcatcctc
gcgcggattcgcgatggcgaagttcggctgttcacccgcaatggccatgactggaccgat
cgcctgccacgccaggccaaggccctggaagccctgaagctcaaggacagttggctcgac
ggtgaggtggtcagcctgaacgccgacgggctgccggatttccaggcgctgcagaacgcc
tttgatatcggccgcagcctggacattgtctattacctgttcgatgcgccgttcctcgac
ggccgcgaccagcgcgaagccgctgtcgaagagcgccgcaccgcactgaaggacgcggtt
agccgcagcaagagcaagctgctgcgcttctccgagtcctttgctgccaaccagcgggat
atcttcgagagtgcctgcgacctggcgctggagggcgtgatcggcaaacgtgccggcagc
tcgtacgtttccaggcgtagcccggactggatcaagctcaagtgccggctgcgccaggaa
ttcgtgatcgtagggttcactcgcccgcaaggttcgcgcagcgggtttggcgcgctgttg
ctggcggtcaatgatgacagcggcctggtgtatgccgggcgcgtaggtaccggattcgat
caggccgcgctgaaaaagatcagtgcacagttgaaggcgctggaacgccagacttcaccg
ctggccaagcccctgaccagtgcccaggcacgcggcgtgcactgggtcgagccgcagctg
gtgggcgaagtgcaatttgccgaatggacccgcgaaggtgtggtgcgccaggcggcgttt
gtcgggctgcgcaccgacaagccggcggagcagattgtgcatgagcagccgcggacggcc
aaatcgctgaaggaaaaaccccgcaaaaagacggcgggcaccggcgccgtggctggggtc
aggattacccatccggaccgagtcatcgatgcccagagcgctacacagaaactgcaactg
gcacagttctatgagggcatcagcgaatggctcctgccctttctgcgcaaccggccggta
tccttgctcagggcaccggaaggcattgccggcgaacagtttttccagaagcactccgag
cgcctggcgatcccgaatatcaagcaactggaccaggccctggacccgggccatgcgcgg
ctgatggaaatcgacagcccggccgcgctcatcggtgccgtgcagatgggtaccgtcgag
ttgcatacctggggcgctaccgctgacaagattgaagccccggacctctttgtgctcgac
ctcgacccggacccggcactgccgtggaaaagcatgcttgaagcggcgcaactgaccttg
tcggtactcgatgaactggggcttgaagcgttcgtcaagaccagcggcggcaaaggcctg
cacctggtggtgccgctggcgcgccgcgacggctgggactcggtaaaagccttcgccaag
gccatcgcccagttcatgacgctgcagttgcctgaacgctttaccgcgacttcgggcccg
aagaatcgcgtgggcaagatcttcatcgactacctgcgcaacgcccggggcgccagcacg
gtagccgcctactcggtgcgggcgcggcccggcctgccggtatcggtaccggtgagtcgt
gatgagttgaagagtctgcacagcgcccaacaatggacggtggctaacctgcacgagcgt
ttgcagggtttgaagaaggacccgtgggcgggttatgccaatcggcagaagatcagcaag
aagatgtgggagaagctgggggcgcatccgccaggctga
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