Pseudomonas sp. SXM-1: DCC84_19825
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Entry
DCC84_19825 CDS
T11095
Name
(GenBank) type IV secretion protein Rhs
Organism
pssx Pseudomonas sp. SXM-1
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
TEN_YD-shell
Tox-HNH-EHHH
PMT
OCRE
Motif
Other DBs
NCBI-ProteinID:
QBQ11850
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Position
4208432..4213063
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AA seq
1543 aa
AA seq
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MDVETKDVEAVFRNFRECLNTFDDWAESFWSFSSLEVEQVFKVGDEVALVAPVSSKAPST
TVAMCKPNGALTLVHMFESKRFVPIGNTPVILQAIAEDGSLIGPPIHKTIGPSGILEITD
CTRDQQYQVSFYPDVSKDHVKALYASYQSVISSLESSLRSEWTSTFEEQWKQYSNASALD
RRKLMDAAFVRGITNTLYSLWDGIPNLYDWLADIKPNSEKLLQYLSQGELEELLKLSNEA
IANGLLVLSDEPLLFIYLSAMFSWAQLLPPPDMNELLGEMTSEVLLNLLLLLATGGMGVA
VRLGPQVLGKVRSGRARVLLEQMAKLGEAPRLDWHPSVLKPVSLKNDPVSIKAAAVPLKA
GVNEVSNPAALVRKPKAARTALVKQEHVDDAPASAKNPNGDASVCSANTCTNGCPVSMVT
GEELLTLTDGSLEGVLPFAWTRLYRSSAVEVDCGLGFGWSHALAQRLVVSGGSVVWTDHE
NRSTTFPLPSAARPAITNSLAEAAIYLGALPDEWVLAQASLFYHFRDGVLTAISDAYDNR
LRISRDYSGRIQRIDNHVGQGLLLRYEHGHIVAVDYQVQREPGWVTEQNVVSYTYDDAWR
LVEATNAVGESERYRYDDQQVILERELAGGASFFWEWERSGKAARCVRHWASFSQMDTRY
VWDDNGTVTVHNADGSQEVYVHDQRARLVQRIDPDGAQHFKSYDEKGRLTVEQDPLGAVT
AYQYDEAGRLIALFPGDDTPTSYEHDNGFVRVVRRGDAVWKYQRNDQGDITRKTDPDGNY
TEYTYTQHGKLSGAWYPDNSSQRLIWNERGQLIEEKLANGGVRRYRYDELGRQVACEDEH
GALTQYQWDAVGRLLKVIQPDGATREFSYNPYGKITAERDELGRVTRYEYADGLHLISRR
INPDGTQLKYRYDNVRLLLTEIENEVGETYRLDYHANGLIQQEIGFDGRRTAYAYDLAGH
LLEKTEYGDDGSRLVTGYQRDSAGRLVRKTLPDRSIVDYTYDRLGNLLSVDDGHWPLHYE
YDLQNRLTAEHQGWGTLRYRYDECGQLNYLRLPDNNRLTFHHEKGGDLATVELNGSLLTS
HLFKSGREHQRQQGQLLSHYHYDDQGRLHAHAITQQEQRYQRRQYDYDKRGNLTRILDTR
KGQHDYHYDPLDRLTRADHSHDLQERFVHDPAGNLLMQDRVGPSVVKGNRLLTQGDRHYD
YDAFGNLLRERRGRARQLVTEYSYDCRHRLISVTQPDGTQASYRYDPFGRRIAKTIKSQT
TEFFWQGDTLIAEHSADHHQSYIYEPNSFRPLALLKGYGPGNVKPFHYQLDHLGTPQELT
APDGEIVWSAHYRAYGQIAKLDVNTVTNPLRFQGQYFDPESGLHYNRHRYYNPDIGRYLT
PDPVKLAGGLNGYQYVPNPTGWVDPLGLNTCPGGDGCKPTHRAEDPASKAKVNEGDVEPP
KGFDSKLSRNGALRRAKEIGGIPRSAQPIAVERDKIRDQDRYISGRIYVFSLKKGHVTKI
YEHSLGHVEGNHGPHFNTKNTIGGIKVPLRIGDDSHTYFKRKP
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atggatgtggagacgaaggacgttgaagcggtctttcgtaacttcagggagtgccttaac
acgtttgacgattgggctgagagcttctggagcttttcgtcgctggaagtcgagcaggtg
ttcaaggttggggatgaggtcgcgctggtcgcgcctgtttcctctaaagcccccagtacc
accgttgcaatgtgcaaacccaatggtgcgctgaccctggtgcatatgtttgagagcaag
cggtttgtgccgatcggcaacacgccggtcatcctccaggccatcgccgaggacggcagc
ctgatcggtccccccattcataaaaccatcggccccagcggcatcctcgaaatcaccgac
tgcacgcgcgaccagcagtatcaggtcagcttctaccccgatgtttccaaggatcacgtc
aaggcgctctacgcctcctatcagtcggtgatcagctcgctggaaagcagcttgcgcagt
gaatggacgagcaccttcgaagagcagtggaaacagtactcaaacgccagcgccctcgac
cgtcgcaagttgatggacgccgcgtttgtgcgagggattacgaacacgctgtacagcctt
tgggacggtattccaaacctgtacgactggctggcggacatcaaacccaatagcgaaaag
ttgctgcagtacctctcccaaggcgagcttgaagagctgttgaagctcagcaatgaggcc
attgccaacggtcttctggtgctgagcgatgaaccgctgctgttcatctatctgtcggcg
atgttcagttgggcgcaattgcttccgccgccggacatgaacgagctgctgggggaaatg
acttccgaggtactgctcaacctgctgttgctgttggccaccggcggcatgggtgtggcg
gtgcgtttgggcccgcaggtgctgggcaaggtcaggtccggccgggcacgggtgttactc
gagcagatggccaagttgggcgaggcaccacggctggactggcaccccagtgtgcttaag
ccggtgtcgcttaaaaatgacccagtgtcgatcaaggcagcggccgtgccgttgaaggcc
ggtgtaaacgaggtttcgaatccggcagcgctggtccgaaagcctaaagcggcgcgcacg
gcgctggtgaagcaagaacatgtggatgatgccccggcttcggcgaaaaaccccaatggg
gatgcttcggtctgttcggcgaatacctgtaccaatggctgtccggtttcgatggttact
ggtgaggaactgctgaccctcacagacggctcgttggagggtgtcctgccatttgcctgg
acgcggttgtatcgcagcagtgccgtggaagtggattgcgggttggggtttggctggagt
catgcgctggcgcagcgcttggtggtgagcggcggatcggtggtgtggaccgatcacgaa
aaccgcagcaccacctttcccctgccctctgctgcacggccggccatcaccaatagcctg
gcggaagcggcgatttatctgggtgctttgccggatgaatgggtgctggctcaggcgtcg
cttttctaccacttccgtgacggtgtgctgacggcgatcagtgacgcttacgacaaccgg
ctgcgcatttcccgcgattattcagggcggattcagcggatcgataaccatgttggccag
ggattgctgctgcggtatgagcacggccatatcgttgccgtcgactatcaggtgcagcgg
gagccgggctgggtcaccgaacagaacgttgtttcctacacgtacgacgatgcctggcgg
ttggttgaggcgaccaacgcggtaggcgaaagcgagcgttatcggtacgacgatcagcag
gtgatcctggagcgggaactggccggtggggcgagtttcttttgggagtgggaacggtcc
ggcaaggcggcgcgatgtgtccggcactgggccagcttttcgcagatggacacgcggtat
gtgtgggatgacaacggcacggtcaccgtgcacaacgccgatggcagccaggaagtctac
gtccacgaccagcgcgcacggctggtgcagcggatcgatccggacggcgcgcagcacttc
aaatcctacgatgaaaaaggccggctgacggtcgagcaggatccgctgggggcggtgacg
gcctatcagtacgacgaagccggtcggttgattgcgctgtttcccggggacgatacgccg
acgtcctacgagcatgacaacgggttcgtacgggttgtgcgccgtggtgacgcggtgtgg
aaataccagcgtaacgatcaaggcgatatcactcgcaagactgatccggacggcaattac
accgaatacacctacacccaacacggaaagctcagcggtgcctggtatccggacaacagc
agtcagcggctgatctggaacgaacgcggccagctcattgaggaaaaactggcgaatggc
ggtgtgcggcgttatcgctatgacgagctggggcggcaggtggcttgcgaggatgagcat
ggtgcgctgacccagtatcagtgggacgccgtaggtcgtttgctgaaagtgattcagcct
gacggggccacacgcgaattcagctacaacccgtacggaaaaatcactgctgagcgcgac
gagttgggccgcgtcacccgctacgaatacgccgacggtctgcacctgatcagccgtcgg
attaaccccgacggcacacagcttaaataccgttatgacaatgttcggttgttactgacc
gagattgaaaacgaggtcggcgaaacctatcggctcgactatcacgccaatggcctgatc
cagcaggaaatcgggtttgatgggcgccgcaccgcctatgcctacgacctcgccgggcat
ctgctggaaaagaccgagtacggcgacgatggcagtcgtctggttactggttatcagcgg
gacagcgccggtcgcctggtaagaaaaaccctgcccgaccgcagcattgtcgattacacc
tacgaccgcctcggcaatctcctcagcgtcgacgacggccactggccgctccactacgaa
tacgacctgcaaaaccgcctcaccgccgaacaccagggctggggcacgttgcgctaccgc
tacgacgaatgcggccaactcaactacctgcgcctgcccgacaacaaccgcctcaccttc
caccacgaaaaaggcggcgacctcgccaccgtcgaactgaatggcagcctgctcacctcg
cacctgttcaaatccggccgcgaacaccaacgccagcaaggccaactcctcagccactac
cactatgacgaccagggccgcctgcacgcccacgccatcacccaacaggaacaacgctac
cagcgccgccaatacgactacgacaaacgcggcaacctgacccgcatcctcgacacccgc
aaaggccagcacgactaccactacgacccgctcgaccgcctgacccgcgccgaccactcg
cacgatctgcaggaacgcttcgtccacgacccggcgggcaacctgctgatgcaagaccgc
gtagggcccagcgtcgtcaaaggcaaccggctgttgacgcaaggcgaccgtcactacgac
tacgacgctttcggcaacctcctgcgggaacgccggggtcgggcgcggcagttagttacc
gaatacagttacgactgtcggcatcgcctgatcagcgtcacccaaccggacggcacccag
gccagctatcgctacgacccgtttggtcggcgtatcgccaaaacgataaaaagccaaacc
accgagttcttctggcaaggcgacacgctgattgccgaacacagtgctgatcaccaccaa
agctatatctacgaacccaacagctttcgcccgttagcgctgctgaaaggctatgggccg
ggaaacgtaaaacccttccactaccaactcgaccacctgggcacgccacaagaactcacc
gcgcccgatggcgaaatcgtctggtcagcgcactaccgcgcctacggccaaatcgcgaag
ctggacgtcaacaccgttaccaacccactgcgcttccagggccaatacttcgacccggaa
agcgggctgcactacaaccgtcatcgctactacaatccggacattggccgctacctgacg
cctgatccggtgaaactggcgggcgggctgaacggataccagtacgtgcccaacccgacg
ggatgggtggatccgttggggttgaatacctgtccgggaggcgatggatgtaagccgaca
caccgtgctgaggacccagcgagcaaagccaaggtaaacgaaggcgacgtagagccacct
aaaggattcgatagtaagctctcaagaaatggagcgctgagaagagctaaagagattggt
ggtattccacgaagcgcacagcctatagcggttgaaagggataagatccgtgatcaagat
agatacatatcgggcaggatatatgttttcagccttaaaaaaggtcatgtcactaagatt
tatgaacactccctaggtcatgtagagggcaatcacggtccacacttcaacacaaaaaac
acgattggaggaataaaggtgcctttgaggattggcgatgactcacatacatacttcaag
agaaagccatga
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