Pseudomonas sp. SXM-1: DCC84_20300
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Entry
DCC84_20300 CDS
T11095
Symbol
tssH
Name
(GenBank) type VI secretion system ATPase TssH
KO
K11907
type VI secretion system protein VasG
Organism
pssx Pseudomonas sp. SXM-1
Pathway
pssx02025
Biofilm formation - Pseudomonas aeruginosa
pssx03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
DCC84_20300 (tssH)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
DCC84_20300 (tssH)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pssx02044
]
DCC84_20300 (tssH)
Secretion system [BR:
pssx02044
]
Type VI secretion system
Imp/Vas secretion system core components
DCC84_20300 (tssH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
AAA
AAA_5
AAA_16
ClpB_D2-small
AAA_22
AAA_7
TniB
nSTAND3
Sigma54_activat
AAA_30
NACHT
AAA_14
AAA_29
Zeta_toxin
SRP54
AAA_24
AAA_18
Clp_N
AAA_33
AAA_6
DUF815
NBD_SMAX1
Hpr_kinase_C
Motif
Other DBs
NCBI-ProteinID:
QBQ11939
LinkDB
All DBs
Position
complement(4305781..4308345)
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AA seq
854 aa
AA seq
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MMNVDLQQLIQALTASTRRDLERSAERCVTRGGGEVLVEDLLLTLLEPPEGVLMRALQDA
GVDAGELQAVLQPRVDQSASRNPVFSPALVQWLQQALLVAHLELGRREVDHGALLLALLR
NPMQHAGSRYQAVMSTLDAPRVLGFLLSENAQAAPAEAGSSLLERFTHDLTRQARDGKLD
PVLCRDNEVRQMIDTLARRRKNNPILVGEAGVGKTAIVEGLALRIVSAQVPEVLRKMRLL
TLDMGLLQAGASIKGEFERRLKGLIDEVNASPQPVILFIDEAHTLVGAGGSAGSSDAANL
LKPALARGELRTIAATTWSEYKKYFEKDPALARRFQPVQVHEPTVDDAVTILRGLVPVYE
ASHGVYVRDDAVVAAAQLSARYLAGRQLPDKAVDVLDTACARVRISLVTAPDELQQLRAE
LAEGTRQQRAVRRDADAGLAIDEQVLQHLTRRLEEVEVAQLQLEQRWTHQRELAEKVLSL
RQQLADAGNLGESTEALAPLLAQNHQALQAIQHEQRLLSFEVCPRLVAQVISAWTGIPLE
QLAREHSAKVLNFADDLRGRILGQEGAVQVLDRCLRAVAAGVNKPDAPVGVFLLVGPSGV
GKTETAHALADLLYGGERSVTTINMSEYQEKHSLSRLIGAPPGYVGYGEGGVLTEAVRQK
PYSVVLLDEVEKADPDVLNLFYQVFDKGVANDGEGREIDFRNTLILMTSNLGSDLVTGLC
ADGHRPAVEVLHAAIRPVLTAHFKPALLARMRVVPYYPVAGAVLHQLIEHKLQRLGQRLL
QRKLAFSHAGDLVAHMAEHCSHSGSGARFVDQWIEENLLPQVVDRLLDAMAVGKSLQFVH
ARLDANGTVICEFS
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatgtggatctgcaacaacttatccaggcattgacggcgtccacacggcgcgac
ctggaacgcagcgccgagcgttgtgtcacccggggcggcggcgaggtcctggtggaagac
ttgctgctgacgctcctggagcctcccgagggtgttcttatgcgagcgctgcaggatgcg
ggcgtggatgccggggaattgcaggccgtgctgcaacctcgggtcgaccagagcgcgtcc
cgcaatccggtgttttcgcccgccctggtgcaatggctgcagcaggcgttgctggttgcc
catctggagctgggccgacgggaagtggaccatggcgccttgctgctcgccttgttgcgc
aacccgatgcagcacgctggcagccgttaccaggcggtgatgagcacgcttgatgcaccg
cgtgtgctcggatttctcttgagtgaaaacgcgcaggcggctcccgctgaggcggggagt
tccttgctggagcgctttacccatgacctgactcgccaggcccgggacgggaaactcgac
cccgtgctctgtcgcgataacgaagtccggcaaatgatcgatacgctcgcgcggcggcgc
aagaacaaccccattctggtgggcgaggcgggtgtcgggaaaaccgcgatagtcgagggc
ctggccctgcggatcgtcagcgcgcaagtgccagaggtgctaaggaagatgcgcctgctg
accctggacatgggcctgctgcaagccggtgccagcatcaagggtgagttcgagcgccgc
ctcaaaggcttgatcgatgaggtcaacgcctcgccgcaaccggtcatcctgttcatcgat
gaggctcataccctggtcggcgcaggcggctcggccggcagctccgatgccgccaacctg
ctcaagccagcgctggcacgaggtgagttgcgtaccatcgccgcgacgacctggtcggag
tacaagaagtacttcgagaaagacccggcgttggcgcggcgttttcagccggtgcaggtg
cacgagccgacggttgacgatgccgtgacgattttgcgtgggttggtcccggtgtatgag
gccagccacggagtctacgtgcgcgatgacgccgtggtcgccgccgcgcagttgagtgcc
cgctacctggccggccgccagttgccggacaaggctgtggacgtgctggacaccgcttgt
gcccgggtgcggatcagcctggtcacggcgccggacgaactgcagcagttgcgcgccgaa
ctggccgagggcacgcgccagcaacgtgccgtgcgcagggatgccgacgcggggttggcc
atcgatgaacaggtgctgcagcacctcacccggagactggaagaagtagaagtcgcacag
ttacagcttgaacaacgctggacccaccagcgcgaactggccgagaaggtgctctcgctg
cgccagcaacttgccgacgccggtaaccttggcgaaagcactgaggctctcgctccgctc
ctggcccagaaccatcaggcgttgcaggccatacagcacgaacagcgattgctcagcttc
gaagtatgcccacggttggtggcacaggttatcagcgcctggacgggtattcccctggag
cagcttgcccgcgaacacagcgcgaaggtcctgaactttgcggatgatctgcgtggtcgc
atcctcggccaggaaggtgccgtgcaggtcctggaccgttgcctgcgggctgtcgcggcc
ggcgtgaacaagcctgatgcccccgtgggggtatttctgttggtgggccccagtggtgtc
ggcaaaactgaaacagcccacgccctggccgacctgttgtatggcggcgagcgctctgtc
accacgatcaacatgtctgaataccaggagaaacactcactgtcccggctgatcggcgca
ccaccgggttatgtcggttacggggagggcggggtgctgactgaggcggtgcggcaaaag
ccctattcagtggtgctgctcgatgaggtggagaaggcggatccggatgtcctgaacctg
ttttaccaggtgttcgacaaaggggtagccaatgatggagaaggacgtgaaatcgacttt
cgcaataccctgatcctgatgacttccaacctgggcagcgatcttgtcaccgggctgtgc
gccgacggtcaccgaccggctgtcgaagtactgcacgccgcgatccggccggtactgaca
gctcatttcaagccggcgctgctggcccgtatgcgagtcgtgccgtattacccggtggca
ggcgcggtgctgcaccaactgattgaacacaaacttcagcgcctgggccagcgtctgctt
cagcgcaagctcgcattcagtcacgcaggggatcttgtcgcacacatggccgagcactgt
agccacagtgggagtggcgcgcggtttgtcgaccaatggatcgaggaaaacctgttgccg
caggtggtggatcgcctgctggatgcgatggccgttggcaagtccctgcagttcgtccat
gccaggctggatgccaatggcaccgtaatctgtgagttcagctga
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