Pseudomonas sp. SXM-1: DCC84_25010
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Entry
DCC84_25010 CDS
T11095
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pssx Pseudomonas sp. SXM-1
Pathway
pssx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCC84_25010 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pssx03019
]
DCC84_25010 (recQ)
03400 DNA repair and recombination proteins [BR:
pssx03400
]
DCC84_25010 (recQ)
Enzymes [BR:
pssx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCC84_25010 (recQ)
Messenger RNA biogenesis [BR:
pssx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCC84_25010 (recQ)
DNA repair and recombination proteins [BR:
pssx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DCC84_25010 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HTH_40
GerE
HTH_29
HTH_23
Motif
Other DBs
NCBI-ProteinID:
QBQ12785
LinkDB
All DBs
Position
complement(5344501..5346627)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVANGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPNVPRIALTATADKRT
REEIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSDRRSDAGIVYCLSRKK
VDEVAAFLSEQGYPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPKPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDNEKIRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDLE
GYGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKSSTSQASQLVRFEEREQWEALRALRK
KLAQEHSVPPYVIFPDSTLLEMLRDHPTTLGEMARVSGVGARKLERYGQAFLEVLGGQVE
APKEVADIRHELISLARAGMTPIQIAGQLQCSEKNVYTLLAESIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVSEIAPLFTGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcaggctcaacgcgtcctcaaggacatcttcggctacgacagttttcgtggc
cgccagggtgcgatcattgagcgcgtggccaacggcggcgatgcccttgtcctgatgcct
accggcggcggcaagtcgctgtgcttccaggtaccggcactcctgcgggaagggcttgcg
gtggtggtgtcaccgttgatcgccctgatggacgaccaggtggccacccttgaagagctc
ggcgtggcggctgcttcgctgaactccaccctcagcgccgaacagcagcgcgacctcgct
gcccggatcaagcgcggcgaagtgaagatgctttacctcgcccccgagcgcctggtgcag
ccacggatgctggcgttcctgcagagcctggaaatcgccctgttcgctatcgacgaagcc
cactgtgtgtcccaatggggccacgatttccgtcgtgaatacctgcaactgggccagctg
gcggaactgttccccaacgtcccgcgcatcgccctgaccgccaccgccgacaagcggacc
cgcgaagaaatcgtcgagcgcctgcacctgcagaacgccgagcgcttcctctcgagcttc
gaccggccgaatatcttttaccgcattgtgcccaaggaacagccgcgcaagcagttgctg
gcgttcctctccgatcggcgcagcgacgccggcattgtctattgcctgtcgcgcaagaag
gtcgatgaggtcgccgcattcctcagtgaacaaggctacccggcactgccgtatcacgcg
ggtttgcccaacgaactgcgggcctaccaccagaagcgcttcctcaacgaggaaggcctg
atcatggtcgccaccatcgcgttcggcatgggcatcgacaaatccaacgtgcgcttcgtg
gcccatatggatctgcccaaatccctcgaggcgtactaccaggaaaccgggcgtgccggc
cgtgacggcctgccggcggatgcgtggatggtctacggcctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgaaggcgacgagcgccacaagcgcctggaacagcacaag
ctcgacgcgatgctgtcgctgtgtgaagaaacccgctgccgtcgccagaccttgctcgcc
tacttcgacgaagacatgcccaagccctgcggccactgcgacaactgcgtggacggcgtg
cagacctgggacgccaccgagccggcgcgccaggcgttgtcggcgatctaccgcaccggc
cagcgctatggcgtcggccacctggtggacgtgttgctgggcaaggacaatgaaaagatt
cgcagcttcggccacgaaaaactctcggtctacggtgtgggcaaggcccgcgccgaaggc
gagtggcgctcgctgttccggcagatggtcgcccgtggcctggtggacatcgacctggaa
ggctacggcggcctgcgcctgaacgacagttgccggccgctgctcaagggcgaagtcagc
ctggagctgcgccgcgacctcaagccgcaaaccaccgccaagagcagcaccagccaggcc
agccaactggtgcgtttcgaagagcgcgaacagtgggaagccctgcgcgcgctgcgtaag
aagttggcgcaggaacacagcgtgccgccttacgtcatcttcccggactccaccttgctg
gaaatgctccgcgaccatcccactaccctcggcgagatggccagggtcagcggcgtcggt
gcgcgcaagctggagcgttatggccaggccttcctcgaagtgctcggcggccaggtcgag
gcgccgaaagaggtcgccgacatccgccacgagttgatcagcctcgcccgtgccggcatg
accccgatccagattgccgggcagctgcagtgctcggaaaagaacgtctacaccttgctc
gccgagtccattggcaagcagcagttgtcgttggagcaggcccttgatctgccggaagat
ttgctcggtgaaatccaggatgcattcctggatggagaaggcgaattgccacccgtttcc
gagattgcgccgctgtttaccggccgcgttcccgagggcgttttgtactgcgtaagggcc
gctttgcagtcggaattcgagatttga
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